GgaINT0045330 @ galGal4
Intron Retention
Gene
ENSGALG00000009564 | METTL8
Description
methyltransferase like 8 [Source:HGNC Symbol;Acc:HGNC:25856]
Coordinates
chr7:17560668-17564353:+
Coord C1 exon
chr7:17560668-17560894
Coord A exon
chr7:17560895-17564062
Coord C2 exon
chr7:17564063-17564353
Length
3168 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TAATTTTTCTTTTCCCCCAGCAA
3' ss Score
8.16
Exon sequences
Seq C1 exon
AAGAGGTACAGAACATGTTCACTTTGGCTGGATTAACTGAAATACAGAATTTAGTTGATCGTCGATTACAAGTAAATAGGAAGAAAAAAGTGAAAATGCAGCGAGTTTGGGTACAAGGCAAGTTCCAAAAACCATTGCTGCTCTCTCTTAATAATCCCGAAGAAACCACCAAGAGGCATCCTTATGGATAACTGTACTGTTAACTTAAGAAACAGAAACAAATCTGA
Seq A exon
GTAAGTATGTTTCATATAAATCTTGTGTTAGCCTCTGAAAAAGAGAAGTACACTGAATTGAAATCCTTTACCCGACATTTTGGAAGTGTATATATTTGGAAATGTTCTGAAAAATATATGCATTTCTAACTTCTTTATATATGCAATGAAAGGAGATGTGTTCATCTAGTCATTAACTGTGACCAGGCATTTTACTTCCTTTCATATGAGTAGTCACTAAGTATAAGCATATGAAATTTCACAGTATGCAAAATGTTTTTAAGTTTTAATGAAGCAGAATTGTTTTTGAGATTTTCAGAACGTCTGCTCTCACTCTCACTACAAGCTGTGCTGTGTTAATTTCTTCTAACCACTGTGTGTCTTGTAACTGTATTTCCTCTTTTGGGGGAAATTCCTTATTGCATAAACAGTGAAGAAAAGATCTGTTTCTAATTTGCATGAAAGCTATTTCATACTAACTGCATGTGATACGTGTAGGTATCAGATTGTCATCCTCTACTGTGACTGGCTTATTCCTATCAAGTCTCCACTTTCCACCCACATGCTTAGCAGAAACATGCCAAACTCTATGTAACAGCTAAGTGACATGTTATATTCCAAGTATTGTAGGTAGTAAGCTGAAAATTGTGTAGAAAAGAATGACCACAATGCCAAAGTAGTGCTGGCACACCTCTTTTCATGCAGTTCAGGATATGGTTGGCCTCTGTGGCTGCAAGCATGCACTATTGTGGGCATGGTGCTGATGGATTAGCAGTTGGACTTGATGAATTTGGAGGTCTTTCCAACCTTAACAATTCTATGATTCTTCTGGCTCACATCTACCAGAACACCCATGTTCTTCTCTATAGGGCTGCTCTCAGTGAGTTCTTTTCCTGGTCTCTACACGTAGATGGGATTGCCCCAGCTTAAGGGGCTGGGGCACTTGGCACCTTGCACTCAGCCTCACTGAACCTCATTAGGTCCACATGGACTCACCTTTTGAGCTTGTTCAGGTCCCTTCAGATAGCATCCCTTCCTTCTATTGTATCAACTGCACCACTCAGCTTAGTGTTATCAGCAAACTTACTGAGGATGCACTCGATCTCAGTATCATTTTCCAAGATGTTGAAATGCTTTTTATAGATCCTGTGGAGAAACAGGACTACACTGGTATGTCAAGTGCTTTTAAGGAGAAAACCAAAATGCAGTCATTGCTTTCAGAGGCACACCATGGTGCTGAGGCAATTGAGTTACTATAAAAATATACTATTTCTGCTGTTTAAATGAAATTTTTATAGTAACTTATTCAGAAGGAGAGGGTTAGGGTTTGGAGAGGATAAGAAACAGGTGGATGAATAAAATAATTGTGTTACTTCAACAAGGATATAGATTTATATAATCTGTAACATGCATGAAGTTTTGAGTCCCATTAATACAGTTACATTCTCAAAGTCTCTTGTCTTGCTTTTGTCTGAAAGGTAAGCATGTCAAACCTAACAACCTGTTGTTTTGGAAGTTACTAGCTGCTGTACTAAGTAAAGCTGGTTGTCTTTGGGAAGAAAGAAATTGTCTAAATTTACATGCTAGGTATCTTCATTCCCTTTGAAAAGATGAAGGACCACATAATTTCCAAAAACCCAGTTATATTTCAAGAATGAGGTGCAGTAACAGATTTCGAGGGTAGGATCTGATCCTGCATTCTTGTGTATTCTAAACTCCCTTTAGAGTAAGATATTTGTTTATGAATGAAGTAATTTAGGTAGCTTGGGTTAGAAAAAATTTTAGTTAGCTTTGGCATACTATAACCTGGAATAACTGCTTCGTGGTGTAGATCAGAGGAAAGGTTAAAATACAGCTGGGTTTCTTCAAAACCACCAGCCTTAATATTCTGCAGCATGTAAATAAAAATCTGGTTATATTTTAAAGAAATTGCTACCCTGTTCAACTTTTATTTTTAACTGTGATTTTTGACTGTGCATAGCTCTGAGTCCTGTATGAAGCTTTTTCAGTTACAGAATTTGCCAGGAGGTGATGGTGATGATACAGTCTTATTGATGTGTATGATGTAGATTTTCCGTATGTAGAGGCTAATGAAATGTTTCCTTTGTCTCTCACACAGATATGTTGATTCTGGCAGGATTTTAATATGCTATGTTATTTTAACAAAAATATTAAATCGGTAGAAACCAAAGCCTGAATTCTTGTATGGCTTTGAGCAAAATTTACTGTTTCTCTTCCACGGCTTGCAGCTCAAGTATTGGCAGTCAGTTTTAGAAGAATGCTGTAGTGGTGTGTCTTCTAGAAGTAACAAGAGCAGCTACTATTTGTAAGAGTGTAGAATATCTGCTGCAGAGAGAATTGCAACTAGGCTGAAGTATTGTCGCACTGATGCAAGGGGAAATGGACAGTATCTTTCCTGATAAGCCCTACCCCCAGTGCAAGTGTTTTTCTGTATTTTGGTTTGTGAAACTTCAGTTTTAAAAACATGTCCCTGGTTAAGCTTTTTGAAAATACTTTCAAAATATCTGTGTTATTTTTTAGCTGGGAGAACCAATAGTATAATATTTCCAAGAGGAAGGCCAGTAGAATTACTGAAGTGAAGAACTGCAGACAACTATATAAAAAATAAAGTTACAGGGGAAAGAAAAATGAGGGCATTGCAAAGAAAAAAGTGCCCGGTGTAGAATAAGGTTGTAAATTTCACTTCTGGAATCTGAAATTACTCCTTTTATCAGAGATATGCCTGGACTCTCTAGTTATATAAATTTATGTAAGTATATGTTATAGGAATAGTAAACATTTCTATTGCAAATGATTGTGGATAGGCTTTTGGTGGTTGGTTTGCTTTTTTTTCCTGTTTAGTAAGGCTTCTTGTGGTGGTAAGGCAGACTTGTGATTATATGTAAATATCAGTTACAGAAAGATGATCTTGAGCTTTTGCTTCACTGACTTTGGCTTTCTTTATTAATAGAGTGTACCTTTTGCCCACCTCCACTGATATGCATTACATTTATGTACAGAGATATATGAGAATAGCACTTACTGTTTTAGACTAGGTGTTCTTTATGTCACATAGTTTGTAAGCAAGTACAAGACAGTTACATACTGAAAAAAAAGCTAACTTTTTTCCTGTGCTATTTCTGAGCTGTCTAGTCAGCAGCAACTCATGTAATTTTTCTTTTCCCCCAG
Seq C2 exon
CAAAACCGAGGCAGGTGGTTGTGCAATATCTACAAATCCACCAAATCTGAAGAGGACAAAGAAAATGCAAGGCAGGCAAGGAGACATCAGGAGCTCTAGATACAAGTTTTTTCTTGTATTGGAAACTGTTTTGTTTCTGTTCTGTGTTTAGATTGCATCTCTGCTAATCTGCAGATTCTACTGTTTTGTGATGACAAAAAAATTGTAACAAACAACCCTGAAATTCATATTAAAAACCAATGAAGTCAATTAACATAAATTTTGCTACTTCGTTTTGATTTGTGATGTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564:ENSGALT00000015575:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=PD(8.5=25.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]