GgaINT0045907 @ galGal3
Intron Retention
Gene
ENSGALG00000007511 | F1NM67_CHICK
Description
NA
Coordinates
chr7:7147381-7147902:-
Coord C1 exon
chr7:7147747-7147902
Coord A exon
chr7:7147477-7147746
Coord C2 exon
chr7:7147381-7147476
Length
270 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
AGCTTGCTCTTCTCACACAGGAC
3' ss Score
7.81
Exon sequences
Seq C1 exon
GACTTGATTGGCTGGCGCAATGTGACCCGATTGCTGGTGTATGCAACTGATGATGGCTTCCACTTCGCTGGTGATGGCAAGCTCGGGGGCATTTTGACCCCCAATGATGGCCAGTGCCACTTGGAGGACAACATGTACAAAAAGAGCAATGAGTTT
Seq A exon
GTAAGTACTCTGGCATTGTTACCAGGTTTGCTCAGTGGCTCTGCACCCTGAGCCCATGGGGCATCTCCACAGCAATTACTTACAGCCCTCACGAGGGTCCAGGAGACAGTCCAGGGTGGGGGGGGGGATGATGGATGCAAGCAGAGATGCTGCTGTCTCCGGTGCCTCTGAGTAGTGAAAACTCCTCAGTATCAGGTGTTGTCTTCTTGTTTGGGGTGTTCTGCAAGGTCTTCCTTCCAGCAACTCTATCAGCTTGCTCTTCTCACACAG
Seq C2 exon
GACTATCCTTCTGTTGGCCAGCTGGTCCAGAAACTTGCTGAAAACAACATTCAGCCCATTTTTGCTGTCACCAGCAAGATGGTGGATGTTTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511:ENSGALT00000012144:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(12.2=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGATTGGCTGGCGCAAT
R:
TTTGTAAACATCCACCATCTTGCTG
Band lengths:
252-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]