GgaINT0045908 @ galGal4
Intron Retention
Gene
ENSGALG00000007511 | ITGB2
Description
integrin beta-2 precursor [Source:RefSeq peptide;Acc:NP_990582]
Coordinates
chr7:7179251-7179546:-
Coord C1 exon
chr7:7179451-7179546
Coord A exon
chr7:7179341-7179450
Coord C2 exon
chr7:7179251-7179340
Length
110 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CCTTTGCTCTCCGTTGGCAGAAA
3' ss Score
8.53
Exon sequences
Seq C1 exon
GACTATCCTTCTGTTGGCCAGCTGGTCCAGAAACTTGCTGAAAACAACATTCAGCCCATTTTTGCTGTCACCAGCAAGATGGTGGATGTTTACAAA
Seq A exon
GTGAGTAGGCTTTGGCTGGTCCAGGTGCCTCCTGATGTGACACATGCATGTCCTCCTGCCAATGCTATCACATGGTGAGGACATCTCATTCCTTTGCTCTCCGTTGGCAG
Seq C2 exon
AAACTCAGTGATATGATCCCAAAGTCAGCAGTAGGGGAGTTGAACGAGGACTCCAGCAACATCATTGAACTCATCCAGGTGGCCTACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511:ENSGALT00000012144:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(7.4=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTATCCTTCTGTTGGCCAGC
R:
ATTGTAGGCCACCTGGATGAGT
Band lengths:
186-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]