GgaINT0046619 @ galGal4
Intron Retention
Gene
ENSGALG00000011099 | FAP
Description
seprase [Source:RefSeq peptide;Acc:NP_001180568]
Coordinates
chr7:20594498-20595869:+
Coord C1 exon
chr7:20594498-20594542
Coord A exon
chr7:20594543-20595764
Coord C2 exon
chr7:20595765-20595869
Length
1222 bp
Sequences
Splice sites
5' ss Seq
GGAGTAGGT
5' ss Score
3.34
3' ss Seq
ACCAAGTTCTTTTGTTTCAGTTC
3' ss Score
7.34
Exon sequences
Seq C1 exon
AATCAACAGCACATCGAGGAGAGTCAAACAGGATGGGCAGGCGGA
Seq A exon
GTAGGTTTTCTTGTATTCTGTTTTCATTTAATGGGAATTTACAGCTTTCTGCATCTTCATGGTGATGTTTTGAATGACAAAGAACTATTCAGAGTCACACAATGCTACTGCCTCAAACCTATTACACAGTAGGGTTGAGATGATTTATGATGTTTTATGTTTTGTGAGGCACAGTAATTGGCTGCCAGCTTTCTAAGATTAAAAATGTGTTAATTCTTATGTTACTCTCAGGCAGGTGAAGTTAACAGAATTCAGTATTGGCAATTGCATGCTCTGCCTAAAGGTCTTGCAGTGGACTTAACTGAGAGTCACAATTTTCAGCATGCCATCCTTTAAGAGATATTTTTTTTTTTTTTAAGTAAATATTACACATTTGGATGGAGTAGCCCCTTGGTACCTTTCCTTTTTTCACCTCTTCTCTAGAGGTTGTAACGACAGGTTTTTAATACAATTAGTGAAATTGTACACAAGCATAAATTCCTGCTTTATCCTTTATGAGATTTCCAAGATTAGAAGCTGACTTGGGAATAATTTAACTTTTGGTCACAGTTTCTAATTGAGTTTGTGTTAGTACTATTCATACCCACTCAGGAGTGTTTGGTGCAGTTTGAAGTATTTGCAAGTCATTATCCCGTTCTCATAATTTTGAAAATAAACAGTTGCAGTAACTGGCTTGACAGTTACTCACCTCTTTGTAAGGAGGTGATGGGCTCAAAGGAAGTAAAATCTTAATGGTTTTATCTGTGATAATCTGTTCTTAAACATTAGTATGATAATATGGGAAAGATTGGATACTGATTTCACTCAGTGCCATTTTTTTTCAGTGAATCAGATAAACTCTGTGATTCGCAGAATTCCAGTCTGGCACTGTTCACAGATATTAGTTTCATTCAGAAACTTTTTTTTTCACCTCTAAATATTCTGAAATAACTGTAGATCATTTGGAGTATGCAAATTATTCCATTCTACACCTAAAGATCCTGTATTTGTGGGCAACTTTAGGTATTTATATTACCACTTTAAAAAAGCTGACACGACAGATTATAAATTGCAATTCATGCTGAATAAGGGTGCATATCATGGGTGAACATTTTTCTGAAGTTAATTGTTCTACCTTAACTTTTGAAATAGAGTCCTGTTATTTTTAGTTTTTTGACTATAACCTGTTAAACAGCTTAGACATTCTTTCTTTCATCTCATCTACCAAGTTCTTTTGTTTCAG
Seq C2 exon
TTCTTTGTTTCTGCACCATATTTTACCTCAGACGGCAGTTCGTACTACAAAATTTTTAGTGACAAAAATGGTTATAAGCATATACATTACATCAATGGTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099:ENSGALT00000018083:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(3.8=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]