GgaINT0047462 @ galGal3
Intron Retention
Gene
ENSGALG00000023420 | E1BZG3_CHICK
Description
NA
Coordinates
chr7:17369712-17371271:-
Coord C1 exon
chr7:17370779-17371271
Coord A exon
chr7:17370458-17370778
Coord C2 exon
chr7:17369712-17370457
Length
321 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
CTCCGTGCCTCTTCCCGCAGGAG
3' ss Score
11.41
Exon sequences
Seq C1 exon
ATGATCTTTGAGCAGGGGCCGCGGGCCTTGGCGATCGCAGAGAGCAAGATGCAGAAAACCGCCTACTACGACAACGCGGGGCTCTTCGGGGGCTACACGTACAGCAAGGCCGACGCCTACCCCTACGGCGCGGCCCAGCAGCCCTACGGCGCGGCCGGCCTGGACGGCGAGTACCCCGGCTCCGCCTGCTCCGTGCAAGGCTCCGCGCCCGGCCGCGGCCCGGCCCCCAAGGGCCCCGAGCTGGGCGGCAGCTGCATGCGAACGGCCGGGGGCGGCCCCGGGGGCAGCCAGCCTCCCGGCATCGGCGAGCAGCAGCCCCCGGCTCTGCCGCCGTCCTCCCCGCCCAATCCCTCCAGCGCGCCCCCCCCGAAAAAAGCCAAGGGGGGGCCCAACGCCTCCGGCTCGGCCTCCGCCACCCTCAGCAAGCAGATATTCCCCTGGATGAAGGAGTCCCGGCAGAACTCCAAGCAGAAAAGCACCTGCCCCCCCTCAG
Seq A exon
GTAGCCCCCGCCCCGTGGCCCGATGTCCTTTCCACGGCCTTCCCCTGCATCCCAGCGCCTCCAGCCCGGCTGCAGGGGGCGGCCCGGGGGCTCCCATCCCGTCTTCCTCGACGGGCGCGGCCCCGACGGAGCCTTCACGGGCCGAGGGCCCTGAAGGAGGCGGCGGAGGAAGGGAGGGGTGCGGGGGGTGGAGGGGGGGGGGGGGAGGAGAGGTGTGGGCGGCCGTACCCGGTCCCACGCGGAGCGGGAGGGGCGGAGGGCTCCGGGGGACCCCGGGGGCTTTCGTGGGGGACCAACGGCTCTCCGTGCCTCTTCCCGCAG
Seq C2 exon
GAGAGAGCTGCGAGGACAAGAGCCCCCCCGGACCGGCCTCCAAGCGGGTGCGCACCGCCTACACCAGCGCGCAGCTGGTGGAGCTGGAGAAGGAGTTCCACTTCAACCGCTACCTGTGCCGGCCGCGCCGCGTGGAGATGGCCAATCTGCTGAACCTGACCGAGCGGCAGATCAAGATCTGGTTCCAGAACCGCCGCATGAAGTACAAAAAGGACCAGAAAGCCAAAGGCATCATGCACTCCCCCGCCGGCCAGTCCCCGGAGCGCAGCCCCCCGCTGAGCGGCGCGGCCCACGCCGGCTACTCGGGGCAGCTGCCCGCCGTCGGCGGCCTGGGCTACGACGCGCCGTCGCCCACGCCGTTCGCCAAGGCGCAGCAGAGCATGTACGGGCTGGCCGCCTACACGGCGCCGCTGGGCGGCTGCCTGCCGCAGCAGAAGCGCTACGCGGGCGCGGAGTACGAGCCGCACCCCCTGCAGAGCGGCGGCGGCTTCGGCAACCCCGGCCTGCAGGGCAGCCCCGTCTACGTCGGGGGCAACTTCGTGGACTCGATGCCGGCCTCGGGGCCCGTCTTCAACCTGGGCCACCTGCAGCACCCCTCCTCCGCCAGCGTGGACTACAGCTGCGCCGCGCAGATCCCCGGCGGCCACCACCACGGACCTTGCGACCCCCACCCCACCTACACGGACCTCTCCTCGCACCACGCGTCTCAGGGACGGCTGCAGGAGGCCCCCAAGCTCACGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023420:ENSGALT00000038692:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=NA C2=0.498
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=22.9),PF132931=DUF4074=WD(100=25.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCGCCCAATCCCTC
R:
AACCAGATCTTGATCTGCCGC
Band lengths:
342-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]