GgaINT0047471 @ galGal3
Intron Retention
Gene
ENSGALG00000009270 | F1NZJ4_CHICK
Description
NA
Coordinates
chr7:17415849-17416769:-
Coord C1 exon
chr7:17416028-17416769
Coord A exon
chr7:17415879-17416027
Coord C2 exon
chr7:17415849-17415878
Length
149 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
GCCTGCGAAGATTTTGGCAGGCG
3' ss Score
-2.51
Exon sequences
Seq C1 exon
ATGTCCTTTCCCAACAGCTCTCCTGCCGCTAATACTTTTTTAGTAGATTCTCTCATCAGTGCGTGCAGGAGTGACAGTTTCTACTCCAACAGCGCCAGCATGTATATGCCACCTAGCACAGACATTGGGACTTATGGGATGCAAACCTGTGGACTCCTACCGTCTCTGGCTAAAAGAGAAGTTAATCACCAAAATATGGGTATGAATGTACATCCTTATATACCTCAAGTAGACAGTTGGACAGATCCGAACAGATCTTGTCGAATAGAGCAACCTGTTACACAGCAGGTCCCCACTTGTTCCTTCACTACAAATATTAAGGAAGAAAGCAATTGCTGCATGTATTCCGATAAGAGAACCAAACTCATTTCTTCAGACGTCCCTTCCTACCAGAGGCTGGTGTCTGAATCATGCCCCATTGAGAACCCCGAGGTTCCCGTCCCAGGATATTTTAGACTGAGCCAGACCTACGCCACTGGGAAAACCCAAGAGTACAATAATAGCCCTGAAACGAGTTCAACCGTAATGTTACAGTTAAACCCTCGCGGCAGCTCCAAACCGCAGCTATCTTCTCAACTTCAGATGGAAAAGAAAATGAATGAAAACCCGAACGGCCAGGACGGCGCGGCTAAAGTCTCTCAAGTGGAAAGTCCCGAGCCCAAGTCCACGTTGCAAGACGAGAGGAGCTGCCTGCCCGAAGGCTCCGTGTCCAGCCCCGAGGTCCAGGAGAAGGAGACTAAAG
Seq A exon
GTCTGTATTACCGAGCTTGAGCCGCGCCGTGCCGAGATCCGGCACCCGGCACCACGCAGCTCCCCGCTGCCCTGACGAGCCCGCGGCCACCCCGCTTCACGGGGACGAGTGTGGGGCTGCAGGTGCTGCGCCTGCGAAGATTTTGGCAG
Seq C2 exon
GCGAAAAACGCCACACAAAAGGGTCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009270:ENSGALT00000015082:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.493 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACAGTTAAACCCTCGCGGC
R:
CTTCGGACCCTTTTGTGTGGC
Band lengths:
244-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]