GgaINT0047473 @ galGal3
Intron Retention
Gene
ENSGALG00000009270 | F1NZJ4_CHICK
Description
NA
Coordinates
chr7:17402664-17410531:-
Coord C1 exon
chr7:17410448-17410531
Coord A exon
chr7:17402807-17410447
Coord C2 exon
chr7:17402664-17402806
Length
7641 bp
Sequences
Splice sites
5' ss Seq
GGGGTGATG
5' ss Score
-0.12
3' ss Seq
GTTTTTGTTTCGAACAGCAGCGC
3' ss Score
2.5
Exon sequences
Seq C1 exon
GTCTTCCACCTGTTTTAAAACAACACAATGGGCATCTCTTTCAAAACGCGAATCCTTCCCAGGGAAACTTTCCGCCGGGGGGGG
Seq A exon
GTGATGGGGGGGGGCGGACGGGGGGGACGGGGACGGATAATAATACCCGCACACGCTCTGAAATATGGAAGTGCCGCAATGTGCTTTTACTGTAACATTTTCCTGTTTTATGAGAAGTCGTTACAGTCCCAGCTTGCGACGGTTTGTTTTTACAGGCAAGAATCCCCCCTTCCCAGCGGGTTTCCTCGGCAGCTCGGAGTGTGATTAGCAAGCCAAGGCCGTTGGATGTATTTAAACACCCTGCCTCTCATTGATTAAGAAATGAATGGCAGAAATCACTCGGAGGAGGTGAAGAAATAGTCCGCGGCCGTGGGCTGCCGGCTCGGCCACGCCCGGCGCGCCCCGGGAAGGGCACGGGCAGGGAGCGGGGCAGGGAGCGGGGCAGGGTGGGCTCGGAGGGGGCATCGGGCGGCGGGCGGTGCGGGGCGGTGCGCTGCGGTGCGGGGCGGTGCGGGCGGCCCCGGAGCGGTCCCGGGTGCGCCGCGCGGTGCTGTTGTTGATGATGATTTTTTTTTTTTTTTTAATCACAGCAGCCCCAGTTTAGCGGATTGATTTACTCGCAGTATTGGTAAATATGATCACGTGGGCTCCGCAACCAATGGTTGAGGGTTGCAGTCTGCAAAATACTACGATTGTTCTCAGGGAGGGTATCATATACAGTTAACAGTGTAACCTTTTATATGAGTAAGAGGGGAGCCTAAAATGTCGTCTAGTGGCACCATAAGTAACTATTATGTCGATTCTCTCATAGGCCATGAAAGCGAAGAAGTTTACGGGAGTAGATTCGTCCAGGGGGGTCACAGTGCGACCTCCAGGCCATCAGGTGTGGCAGAGAGTTCCGATTTTTCCTCCTGTAGCTTTGCACCAAAATCCACCGTGTTCTCCACCTCCTGGTCCACGGTTCACCCGCAGCCGCCCGCGGCCATGACCGGGATCTACCACCCCTACATGCACCAGCCCCACTTAGGGGCAGCCGACGCCGGCCGCTACGTGCGCTCCTGGATCGAGCCCTTCCCGGGCTTCCCGGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCTCCGCGTCCGGCTCGGGCTCGGGCTCGGGCTCCTCCGCCGGGCGCCACTACGGGATAAAGCCGGAGACGGGAGCAGCCGCCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCAAAAGGACTGAGTGCTCCTCGTCCCGAGAGTCCCAGGGGATCGCCGTGCCCGAATACACGTGCGGCGCTTTCCTGCCGGAGCCCCGAGAGAAGGCGGCCGCCGGCAGCGCCAAGGAGCCCGCCGCCTGCAGCCACAGCCCCGGCCCCGGCGGAGAGCCGAAGGAGGAGAAGCAGCAGCAACTTGACCCAAGTAAGTGGGGAAGGGGAGCGAGAGGGGAAGAGCGGCGGGGAGAGAGGGAGCGAGGGAAAGAAAGGAAGAAAGAAAGAAATTGCCCCTTTGATTTATTGCCGAAACCTGTAAGGCTCGAATGTGCAAAACTGATAGTTTTACTAACCTATAAAAACGTCTAGACGCCTACCCCAGCGCGAGCAGCAACAAGCACCCATAAAAGACTCCACATAACCACCTACCATCAAGACATCATTTGTACAGTAAACAGACCGGGGCATTAAGGCTTTTATGATAATCTCCCGAAAAAGTGAAAACAGTCCATCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTATTTCTGCCGTAGAACGGCATCGGGAAGCTCGGGTAAGAAATCGTCCCAAAGCCCACGCCGTTTCCTTTCAGTACTTCATCTCGGGCACAGTGACGTATTCGAGCTCGGATAAATATCTTCTTCTTTTCCCTCTTGTTTTCCCCCGTATTTCTTCGGCTTCTCCCTCTCGCTCCGCGTGTTCGCTTCAAAATGGCAGAAAGCAAAAGCTCCCCGCACGGCTCTTCCGCGTCAGACGGCAGCCCGGTTCGGTCCGTCCGCAGCGTTACTGCGGGGCTGTGCTCAGCACGCAGCGCCGGGCGGCTCCGCGCGTCGCGGGGCGCCTACACAAAGAATCCTCCTTACTTTCGTTTGCATAAATCAATCTAGGGAGACGTAAGCGCACGGGTAAACAAAATAACGTGTTCAAGACAAAACCGTATAGCTCTGAAACTACCACACATGGAGTATCTGTGGTGTAATGTGTGGGGAAACATGATCGAAAACGCGATAGCAGAGCTCTTCAAAGCCCCGGCGTCTGTGCTGGCTGCCATGTGTAAGCGAGGCGCATTCTTTGTATGTAGTTAATTAGAGCACTGGCAAAAAATTAAAAGAAGGTCACAGAAATGTGCTAAGTAAATGGCACTGGGAACGCCGGCAGACGAAACGAGAAGAAGAAGGAAAAAAGAAAAGGAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGGCAAAGAGGAAAAGAAATATATATGTATAAATTAAGGAAGAAAAGCAAAGCAAAAACAGAAGAAAGGAAATGAAAATCCGCTCGTGGCTGAGCGCGCTGACAGGCGGATCAGAGCCGTGCCGCTTCGTCGCTGCGGCTCTGGGGTCATTGGGATTATGGAAACCCCTTCTCGGTGAAGGGCTGCGCGGGTCACCGCCTGACCGTGCCTCCGTCCCCCTTTCTGTCCCCGTCCCCGTCCCCGTCCCCGTCCCTGCCACTTCGCGCCGCCAGAGGGCGCCCGCGCTCCACTCTACCGCCGGAGCCGCGCCCGCCGCCCGCGCCCCTTTCCGCGCCCGCGCAGCGCCCCGCGCCCAGTCGGGGTAGCCGCGCTCCGGCTCCGGCCCCGCGGACGCGGACGGGCGCGGCGCTGCCCGCGGGACCGCTGCGGCTTTGTGGGGCTGCGGGGTCCCCGACCGCCGCTCCGCGGGAAGCCGCGCAGGGCTGAGCGGGGCTCCGGTGCCACCTCCGCAGCCCCTGCCGCTATGGGCGTCAGCCGCTGTGTTCTCCCGCAGCAGCGGAGATCTGTGTGCTCCAACACCCGGGAGTGAGGGGTGCGTTCGGGCACCGCGGGGGGAACGCCCCGTGGTCCCCATCCCCGGACGGGGATCGCTGCTCCCGGGGGGGCCGTGCTGAGCCGGGCCGTGCTGTCGTTATGCCCCGGCTGTGTCCGCCCGGCCGCACTCTCACCGGGCCACCGGCAAGGCCCGGGCTGCGTCCCCGCGGTGTCCCCCCGGGCATGGAGGTGCCTTGTGAGGTGCAGGGGCGGCTTCCGAGACAAAGGGAGAGCCGGAAGTGGGGGTGGGTTGAGGTGCGGGCCGCGGTGGGGCAGGGGTCTGAGGCGGCTGTTACGGAACCACAACGTTGTTGTCAGTTCACACCAGACGGTCACACGTGGCTCTGACAGGCCCGTCTAGCGTTTCACCTCCATTTTCTGTGTGTTCGGATCAGGACGGACTCAGGCTCCTGGGGGTGTTTGCCCTCTAAAGCTGCTCCCGCTGCGGGAAAAGCGGTTCGCCGGGAACCTCGGTGGGGACCAGAGGACGGAGACGGCGCATCGCGGAGCGCTGGGAGCGGGACCGTGCAGCCCTTCCTGAGAGGCCTTCCCCCGTCCTGGAGCCCGACGGGCAGCGCCTTCCTCCCTTCCTCCCATTCCTTCCTCCCTTCCTCCCATTCCTTCCTTCCTTCCTCCCTGCCCGGGGACGCGCTCGCTGCTCCTTTCGCCCAGCGGCCCCGCGCTGCTGCCCGCGCACCCACCCGCCCTTCTTCCTCCCCCTCCCTGCCTCGCTAATGACGTCCACCGAGGGTGAAATGATGGAAAGTATATTCATGGGCATGATTTCCATTAAGTGTCAATTAACCTGGGGCCTCAGCCATGCGTGCACGGCGTCAAGGGTAAATGTGCATCTCATTTCCCAGCGCTCCGCTCTCCCGCGAGGAAATGATCCGCAGGGCCCCGGCCCCAAGAGCCGCCGCCCGCCCCCCCCCCCTCCACCCCCCCCGGACGCCCTCCGGACGCCCCCGGCTCCGCGCACCGGGCGGCTGTTCCCTGCGGGCTCTCTCCGGCCGCGGCTTTGGGCCGGCCCCGGGCAGCGCGCCCGCGGTTATCGCGCGGATCTGCGCGGCCTCGCCCGCGCGGCGGGGGTTCGGCGGCTCCCGGCGGGGGGAGCGGGGGCGCCTCGGCCGGGGTGGATCCGGGCAGGGCTGGGCCGGGTTTATTTCTTGCCTGAGGAGCGGCACATGTAAACTGAAGCCAAAAGTCCCCCCTGAGCTCATGAGCGTGCTTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCGCGGGCTGCTGTGTGCCTGATATGAAATAGTAAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTGCAGCGGGGTTACCTGTCACGGGGAGCCCGCTAAATTTTACGGATACGATAACTTACAGAGACAGCAGATTTTTACGACACAGCAAGAGGCCGAGCTGGTACAATATCCTGACTGTAAATCGTCCAGTGCTAATATTGGCGAGGAACCAGACCACTTAAATCAGAGCTCGTCTCCCGCTCAAATGTTTCCCTGGATGAGACCGCAAGGTTGGACGCAGTCGACGTTCGCTTCCATCTCACGTCTGAGTTCGAAACTTTCTTTTCCTCCTCCCTCTCCTCTCTCCCCGCTCCCTCCGTTCCTCCCCTCTGTGCCTCTCGCCGCGTTCCCGCGCCGCTCTCGCTAACGGAACTGCGGGAGGACCGCGGGGCTGGGGGTGGGGGGGCTGCTGAGCTCCCGGGGCACGGCCGCCGGGGGGGAGCGCGGGGCCGGGGGCGGTCACCGGGCGCTGCCGCGCTCCCGCAAACTGCGGCGCCGGGGAGGCGCGCTACACTCACCGTTCACACAAATCTGTATTTCGGGAGGGAACTTTCCTACCACAGACGCTACTGTCCCTACAGAACCACATCTGCTGGCAGAGCTGTTGTTTCACGTGCCCTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTACATCTAGGCAAGAATTGGGATGAACAAGTGTGCCTGCAGTATTCTTTTTCTGTCGGTTTTTAAGTAGAGCCCACTTCAACCGAATAGGGCTGACTGAACTGCTCTCTTCACTAGAATTGTGCAATGAGAGAATTTCTCTCAAGGTAAAATCCTAGTCATGTTGTTCTTGTCATATCTTAGGTTTCTACTTAGGTTACTTGAATGATGAGATGCAGCTGCCTCCTTGCCGGTTAATAAACCTCCTGTTAAAACAGATGTGCTAATACTCAAAATGCAACAAACAGGTTTGGACGAAAAAGTTGAGTATGGGGAGTACTTCGGCTTACATAAGTGAGAACATTATGCTTATTGTTCTACTAGATGTTAATAAAATTAAAGAGTCCAATGTGGGGGGCGGGGGGTAATGTACATTGTAAAAATTATTTTAAAGGTTTCAAAGGGGCCGGTCGCTCCGTAATGACAAGAATTCTGTTAGGTAGACTTTTGCAGTTCCACCGCTCCCCGGTCCGGGGGCTCACCCGGGCCCCCCCCGCGCTCTCTTTTCCTCCACTCCCCCCCCCCGAGGGACGTGCGGAGGCCCCCGGGCGTCGCGGACGCGTTGCTCCGAGCCGCCCCAACCCCCGTGTTTTTGTTTCGAACAGCAG
Seq C2 exon
CGCCCGGGAGGAGGAGAGGGCGGCAGACGTACAGCCGCTTCCAGACGCTGGAGCTGGAGAAGGAGTTTCTCTTTAACCCCTATCTGACCAGGAAGAGACGAATCGAGGTGTCCCACGCCCTAGGACTCACCGAGCGGCAGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009270:ENSGALT00000015082:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=91.7)
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]