GgaINT0047493 @ galGal3
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
NA
Coordinates
chr7:24089588-24090050:-
Coord C1 exon
chr7:24089818-24090050
Coord A exon
chr7:24089734-24089817
Coord C2 exon
chr7:24089588-24089733
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCATGCTGCTCACTCTGTAGGGC
3' ss Score
7.74
Exon sequences
Seq C1 exon
GGTGGGCAAAACTGGGTGGCTGTGTGACCTCTTCCTATACCCGCTGTTCCCAGAACGGCTCCTCGCGGGCGGGCGGCACGGAGCCGGCGTCCTCCACTAGGCTATTCCACGTGCACGGCACCAACGAGTACAACACCAAGGCCTTCGAGGTGCCCGTCCGAGCCGCTTCTCTCAACTCCAACGATGTCTTTGTGCTCAAGACGCCCAGCTCCTGCTACCTCTGGTATGGGAAG
Seq A exon
GTGGGTATGGCCTCGACCGGCTCCTCCTCGTCCTCCAGAGGATGGGGTGGGCTCGGAGCAGGAGCCATGCTGCTCACTCTGTAG
Seq C2 exon
GGCTGCAGCGGGGATGAGCGTGAGATGGGCAAGATGGTGGCCGACCTCATCTCCAAGACGGAGAAGCCGGTGGTCGCTGAAGGGCAGGAGCCGCCCGAGTTCTGGGTAGCTCTGGGCGGCAAGACCAGCTACCCCAACAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=NA C2=0.245
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(1.2=1.3),PF0062617=Gelsolin=PU(47.8=42.3)
A:
NA
C2:
PF0062617=Gelsolin=PD(49.3=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGCTATTCCACGTGCACG
R:
CCACCATCTTGCCCATCTCAC
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]