GgaINT0047905 @ galGal3
Intron Retention
Gene
ENSGALG00000009513 | F1P5C7_CHICK
Description
NA
Coordinates
chr7:19264940-19267636:-
Coord C1 exon
chr7:19267483-19267636
Coord A exon
chr7:19265090-19267482
Coord C2 exon
chr7:19264940-19265089
Length
2393 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TTCAATCCTTTTTCTCCAAGCAC
3' ss Score
3.86
Exon sequences
Seq C1 exon
CTGCCTCAGAATTTTTTCTTCATGCAATCGTGTCTACCTGCACAGGCAATCAAGCAATCAACAACGGAGATGCTTCTTTTCTCAGGGACAAAGAAATGCTGTTTATAGCGTAGTCTGGCCAGCAATGGTTTCTCCAGCTCATCCAGTTCCCAAG
Seq A exon
GTACTGCAATTGTTATTATCTAATCTGTTTTTCAGTCAGTGTAGGAGTTGACTGCACAGCTGATCAAGTGCATTGAAAGGTTTGAATACAGTCCTACGTCATGGTCTGGTATTTGAAATAACAGCGCTAGTGAGAGAAGTTTTCAGCTCCCTACCACATTAAGCAGGGTGATGTATCTAGTTATTAGAGAGTTTAAACCTGGGGCTTGTTAAGTTACATTCATATAAACATGGAACGTTATAATCATCTGTCAGCACTTAATGCTTCTAGTCCAGGTTCTCCTTTTGGACCACTATAGACAGTCCTACTAGAAATCATTAGGAATCATTCATGAACATCTGAGTACTTTTCTGTATACGTCTCTAGCAAGCTAATTATAAAAATGTTTATATCTACCTGAATGTTTTGTTAATTGCTGAGTCAGGTTCAGGATGAGAGCACATAATACCTGCTGGTAGCTGCCCTACAGCCCCACTGTTCCATCTAAACTAATCTTGACTCTGGGTATTATTTTTCTTCCAACATATAGTTTTCTCTTTATTTATTTTGGGGCCAGAAGAAGTTTTCTCATTTCATTTTAACATATGTTCCACTTCTGGTTTCCTTTATTTTTTTTCTTTTTCTTTAATTACAACATGCAGTTCAACTGTCTCTTTCATTCAAAGCATCTCTCATTCAGCCAAAAAATTGCCCTTCCTAAGCAGTGCTTTTCTGGATGAGCATTAGTACTTTCCACATGATTATAGATTTCTTGTGTAAAGTGCAAAATATTTCCATGGGCCAGAACTACAGTAAAAAATGTTGTTTAGGAAAGCAGATGGGGATGCTGAATGTAGGGCTCTGACACCTAAGGAGCTATGGAAGCTTTGTGTGCAGGGAAAGCATGTGGTTTTGTGCTCTATATGTTTTCAAAGGTTGAAAAACTTTATCACTTGCTTCTTTTAGGATAAAGGGGAAGAAATATATTGTCATACTAAAAAGTATTCTTCAAAGATCACTGTGCTTACCCTGTCTAAAATTAGTCTAAATTTTTCAACTCTGAAAACTTGAGGATAAGGTTATCACTTGCTACAGAGTATGCCAGACACCAGATTGAGATGACTTTTGCTTTTTCCCCAATATTTTGTTGTGAAACTGTAGGTGTAATGTTTATACATACACTGCTTTGGGTGTTTTCCCTTAACAGTTTTCACAGATCAACAGGTTCAGGTCTCAGCAGTTAGAAAATCAGTGCCTTCCAAGGATGTGGTGGAGGTGCTGTAGTGTATGCAGTGGGTAATCCAGCGAATGTAGTTTTTCCTTCTAAATTAAGTCTCATGGTATATATTTCAACAGGGTGCTGTAAAGGCTGATATGCCATTTATCTTAAATGAAATTCACATTTGAATTTCTGTTGATGTGAATTCGGTAAAGATACAGTTACACTCAAAAAGAGAAGAAGTGATGAAATACCAGTAGGAGCAACAATGGCCTTCTTATTTGAAGTCCTCCTGGAGTTAATAGGTTACACCACTCTTCTTTACCCCCACACTGGGATGCTGTGTGGTCACATATACAGCCAAAGTGGCTGCTTTGCCTCCTGCCCTACCAGCTTGATTCCGTGTTCTGTGAACTGACGCAAAGCCCAACTCTACTGGGTGAAGACACTCTCCCACCCCACTGGTGAGATCACCAGCGCCTATGGAAGCCGAGTGCATTTTTCTCACTGTGCGATGTTATCTTGTTGTGAAATTATTGTGGATTCAAAAAAATAATGAGAAATTAAATTTCACCTCCATGTGAAGACTGAGAGCTTTCTGTGCAAACAGAAAAGAAAGTTTATTACAATTTCAGTGTCACAGAAATTGGAATATCCTTGCGTAGTATTGTAGATGTACAAGTTAGCATGTAGTCTGAGAACTAGATTAACAAGTGAAAACTCTGAATTAAAATAAGTTAAATCCTAGAGTTCTTAGTAAAAAACACACAAAAAGTCTTATGAAAAATGTGAGCAAGAAACTAAGGATCTAATCACACTGTCCAGGTCATTGCAGCGTTCAGATGCTTTTTCTATATGATGTGCCACTCTCTGCAGAAGAAAATAAGAAGGTTATAAATCTTTCTCTCACAGTTTTAAAACTTGAGACTGTGCTGAAAGTGGGCTGCAGTCCTCAGGATTTCAGCACAGGGAGGTTAACAGACTACACAAGTCAGTAGTACCAGGCAATGTTAAGTTCAAAAGGGCAGTGCAAGCAATACTGAGGCAGCCTTGAGGGTTTGCCCTGATGGCTTAGGAAGGTCGATACTACGACAGAAAGGGCAAGCTGCCATGAAGCAGGAGGCAGTATCTGAGAAAATGATCCCATTGTCATGCTCGGTTTTCTGATCTTCATTTTCAATCCTTTTTCTCCAAG
Seq C2 exon
CACATAAAGAAGCCAGACTATGTGACGACAGGCATTGTACCAGACTGGGGAGACGACATAGAAATTAAGAATGAAGATCAGATTCAAGGGCTTCGTCAGGCTTGTCAATTGGCCCGTCATGTCCTGCTTCTGGCTGGAAAGGGCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513:ENSGALT00000015487:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0055719=Peptidase_M24=PU(9.2=42.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]