GgaINT0049032 @ galGal3
Intron Retention
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18096225-18097334:+
Coord C1 exon
chr7:18096225-18096320
Coord A exon
chr7:18096321-18097269
Coord C2 exon
chr7:18097270-18097334
Length
949 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TCTCTGTGATTTTCCTTTAGGGC
3' ss Score
11.23
Exon sequences
Seq C1 exon
AATCTTTCCAGTTGTTTATGGTGGCTGTTCAACCAAGAACCTGGAAGACTGTATGTGGAATTGCAGTTCTTTTGTGCTGTGTTTAATTTTGGTCAG
Seq A exon
GTACTTAATGATGTTTGTTTTGAAAATAGCTTTGTTGGTAGATGTAACAGCATGAGCTGTTACCAGTGCTGTAAGACTAAGCCCTCGAATATTACTGAAGACACCAGTTCCTTAAGCTGTTTTGGCTTTTTCCCCTCAAAACTTTTTCTGTTCTTTTGATAGTTGTCTTATCATAATGCAATTGCTTTGAGTATGAGCTCTTTAAAAGGTACAAAGGGCCGCTGAGTGCCAAATGCCCATGGAAACAGAATAGGATTTTAGCCTCATTTTTAGCAGAACATTTCAGTATAGCTGAATAGGTACAAAAGCTACTGAGATACTTTGGCTATAGGACTTTAAGTTACTGCCTCTACAGTTTCAGTTTCTTCGCTATTAAGTAATACCTGACACAATTAGATGTACAAATGTTACAGCTGCACATAGCTTATTTCAGCGCAAACTGACACATTAGATTTGTCATCTATGAAGGTGAAAGCAAAACAGTGTTAGCCCTTACCAGAGGGAGTATTTCTCAGGTCTGTGGACAAGTGCCCCTCTGAGATGTGGTGCAGTATCAAGTAATGATACTCTGTCTTTGATACAGAAGCAGCATAGAAGAACAGTAGGAGAACATTCCAGCATGTAAATTGTAATCAGTTGACATTAACAAAGACAGATGTAAATACCTGGCTATATAAAGATACTGACATTTTGTTCATTGGATAGCTTGTTTACTGAAGTGCTTCTCTGAGAATTTCTTTGTCAGACTGTTATAGATTAATTATTAATCTGTCTTTTTTAGGACTAAGTGAAAAAACAAAGCAGAAACAAAATGAATTCCAAATGGCGTTTGGGAAAGAGAGATACTCTTAATTTGTGTTTTGGCAGTTAGTTGTTAACACTTTATTTCTGTTCTTCAGAAGTCAAAAGTTTTGCTTAATCTTCTATTTTCTCTGTGATTTTCCTTTAG
Seq C2 exon
GGCTTCATTTCCTTTGGTATTTTTGGCTTAGATAAGCATTTAATCATTCTGCCATTCAAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209:ENSGALT00000022979:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]