GgaINT0049233 @ galGal3
Intron Retention
Gene
ENSGALG00000003553 | E1C7T0_CHICK
Description
NA
Coordinates
chr7:4266196-4267288:-
Coord C1 exon
chr7:4267136-4267288
Coord A exon
chr7:4266374-4267135
Coord C2 exon
chr7:4266196-4266373
Length
762 bp
Sequences
Splice sites
5' ss Seq
TATGTATGT
5' ss Score
3.25
3' ss Seq
CCTTCCCTTTGTTTTTGAAGGTG
3' ss Score
10.03
Exon sequences
Seq C1 exon
GAAGATACGGCATGGCTGCTCCCTGGTATTTCCCACTGCTTCCATCTTACTGGCTTGAATACAACTGGCTCCCCTTCTGGAGTGAGAAACAAAGAGGCTTCATCTTCACCAAGCTCATGTTAAGGAAAGAAGCCAGCTCCAGCAATCAGATAT
Seq A exon
GTATGTGAATACTGAATGGGATAGCGATGCTAGCACATGCTTTAAGTAAACAAAGCCAGATATGAGAAGGGGCACCATGCTCAGAAAGCACATTTCTATGTTAATCCTTACTTTGTAGCACAGGAAAAACTGGAAATTATTACTTATCCAAATGGAGATTTGGCTTTTAAATTGTTTTGTTGCTTTTTTTCTTCCAATTTGATGTGGAAATCCAGTACTGACATTCACATGCATAGCTGTGTATATTGTAGTTGAGCGGACACCTTGGGTTCATATACCTGACCCTACAGTGCTCTGTGTAGAAATACATTTTTGTTTGTGAAAGCAAATACATAATTCCACTTGGCAAAAGGAATGTCTGCTGCTTTGTCCATTTTTTAAAATATTTAGCCTATAAAATATTATGAAATCACACATACAAACTTGCCAGTTCTACCTAACAGAAAGTAACTCAATAGCTTTGCTGTATTTCCTCTAATTTTATATACTTGTTTGGTGTAGATTAAGTAGGTGCTCTGAAAGATCTAAATATAAGACCTTATCAGAAGAGATTAATGCTTATTGTCAGAAGTTATAACAAGTTGCAGAAGTGAGAAGGAAAAATCCAGGAGAGCTCAAAATGTCTCAGATCCTATGAAATGTTCTCTACATTCCTCATTGAAAGTCACCTGCTTTTGCTGTGTTATATGCTATCGAAAGCCTTGCTTGTCTCTGAGTTGAAAAAAGGTAACTGTCCTCTCACCCTTCCCTTTGTTTTTGAAG
Seq C2 exon
GTGCCCCCCCGCCTCACCTGGAGCCAGAACCCACTGATCTCACCTTGGGAGTCTCCCTCCATGGCATAACAAAAGTTTATGGATCCAAAGCTGCAGTGGACAACCTAAGCCTCAACTTCTATGAAGGGAATATAACTTCCCTGCTGGGACACAATGGAGCCGGGAAAACTACAACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003553:ENSGALT00000005620:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(18.4=45.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCTGCTCCCTGGTATTT
R:
GGTTGTAGTTTTCCCGGCTCC
Band lengths:
319-1081
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]