GgaINT0049245 @ galGal4
Intron Retention
Gene
ENSGALG00000003553 | ABCA12
Description
ATP-binding cassette, sub-family A (ABC1), member 12 [Source:HGNC Symbol;Acc:HGNC:14637]
Coordinates
chr7:4225716-4227207:-
Coord C1 exon
chr7:4227120-4227207
Coord A exon
chr7:4225822-4227119
Coord C2 exon
chr7:4225716-4225821
Length
1298 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACT
5' ss Score
6.64
3' ss Seq
AATTTCTCCATTGTGTGCAGGTG
3' ss Score
7.77
Exon sequences
Seq C1 exon
GTATGGTGGCTGGAGTTTTGGGATGCCTTTGACGAGAGATCTCCAGTTTGATATCAAGCCAGTGCCCCCCAGCAGAACATTGACTAAG
Seq A exon
GTGACTAACTTCCATTGGAGTGATGTTGAGTTTGGGGATATTTCAGAAGAGAGAGCAAAAACATCTGAAATCTGCAGCTTGGCATGGGAGAGATGACTTTCAGTTCATTTTCTCTCCTCTTCCCATTCTTCTTTATTGGTCTGACTTCTCTTGCTGATAGGAAACAATTTTTCTGCTGTCATAATTTTATTACCCAGAAGTGAAAAGATTGGTTCGTGGCACCTTTATCTCACGGGAGAACGTATGTAGCTTTGCTAGGGCTGGCTTGTACGTTCTGATTTACCCATTTCTCTGTTTCTGCTCAGTGAAAATGTTGTAACACATCAGCGTTAAAGGCACCAAGGCTGAAATCTGAGGTAGGAGAGAATTGCAGATGAATTCCTGTTGTTTCCATGCTAAACCTAGCTTACCAGGAAAGTGTTCCTGCGAAAGCAGTGCTGTTCTCAGAGGTGTTCCCAGTCAAAGGGAATCACAGGATTCATTGCTTATTGTTTTGCTAATGCTCAGAGCTCGTGTAATCAATTTGCAAATGTTTTCACCCCTTCAATTCTAGATCTGAAAGTTCTTGCTGTTTGCTAATCATGTGTCAGATTAAGTACCTGCAACTTTTCTAGCATTGGAAGCAAGGCTGACTTCCAGCCCTCTCTTTCTTTAGCAGTACTTGCTCTGCTAGGGCAAGAAGAATAAAACCACTGAGCGTGTAGAACTCAGGGATATATAAAGGTGGGAGCTGTGGGCTGTATTTAAGCCTGTAACCTTAATAGCATAAGCCCTTTGTGCTTGGGAAGTAACTTACACCTCTAATCTGGGTGCTGCAAGTTGTTCTTAAAGAAGGTAAATCCCCACAAAGTGCATCTCCTCTGGTCTGATTTCTGCCCTCAGACCTTGGAGTTTACCGTGGTTTTGGCAAAAAGTGATCCTGAGTATAGGAAGGGCTGCTGCTGAATGAGAAGGGCTATATTTTCTGCCCTAAAACAATCTCTTCCCACTTGCTTTCAAGGGAAGCCGATGTTTGACAGGAAAGAAACCACATATCTGTAGCTTTATGTCACATATCCAGTTAGTGCTTTTCTCCTCTCTCAGAAGGCAAATGAAGCTGATGGGACTGCTCATGTTTTAAGTGAAATGTGCTTTTATACCCATTTGGTACCTGATGTGGTTTAATCATTGGACTTTAGCTTGTAGAGCTTATGGCTTGAGATAACAGCTACAGATTCATTTGTGCAAGGAGAACAAACCAAAACGTTATCAGTAACAATTTATCTCCCAATTTGTTTCAATTTCTCCATTGTGTGCAG
Seq C2 exon
GTGTGGTATAATCCCGAAGGTTATCACAGCCTTCCAGCCTATCTGAACAGCTTGAACAACTTCATTCTTCGGGCTAATCTGCCAAAAAATGAGAGTTCCAGATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003553:ENSGALT00000005620:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.3=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]