GgaINT0049537 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:18111213-18112084:-
Coord C1 exon
chr7:18111903-18112084
Coord A exon
chr7:18111413-18111902
Coord C2 exon
chr7:18111213-18111412
Length
490 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
3' ss Seq
ACGTCTTCCTTCTGTTTTAGGCT
3' ss Score
12.46
Exon sequences
Seq C1 exon
TGCACCTACATCACGGTCGAGCAAGCGGAGCAAACCTACGCCGTGGTCCTGAGCCGCCCGTCGTGGCTGTGGGGCGCAGAGATGGGCGCCAACGAGCACGGGGTGTGCGTCGGGAACGAGGCCGTGTGGGGCCGCGAGGAGGTGTGCGATGCCGAGGCGCTCCTGGGCATGGATCTCGTAAG
Seq A exon
GTCTGCACACGCTGCTTTGGTAAATGGGACTGCATACAGAACTTCATTTCAAAGCGTTTGCATTGAGTTACGTGGGTAAATGGGTGCCTTCGCGTGCAGGAAACACATCTGCCTCTTCTGCTGTTCTCGCCGTGGTTAAAAATAAGTATTTAGTGGCACAACAGTTAGCTCGTTCCTCTCTGCCAGGAGCTGGGATGGGAGAGCTATCGCGCACCAAAATAGCCTGACAAGGAAGTTATCATATTCACTCTCTACAAAGCTGATCTGAAAGAAGACTCTTAACGAGGCACGGCTGCACTTGAGGACCCAGTGGGTAGGCCTTTCCTAAGGTCCAGCCTCGCTTCCTATTTCCCCGTCACACATACCTAGCCACACTTCTCCATGTAAATAATGACAACCGCTCACGCATTCCAGACCAGTTTGAATACTCGTGCTGAATAGTTACGTTCAAACCTGTAATTCCAAAGATAACGTCTTCCTTCTGTTTTAG
Seq C2 exon
GCTTGGACTTGAGAGAGCAGACACAGCCGAAAAGGCTCTTACTGTCATAGTTGATTTGCTAGAAAAATACGGCCAGGGAGGAAACTGCATGGAGAGCCACATGGCCTTTACGTACCATAACAGCTTTCTGATAGCCGACAGAAAGGAAGCGTGGGTGCTGGAAACGTCAGGAAAACATTGGGCAGCCGAAAAAGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014270:ENSGALT00000023082:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(20.9=100)
A:
NA
C2:
PF0357710=Peptidase_C69=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACATCACGGTCGAGCAAG
R:
TTTCCTGACGTTTCCAGCACC
Band lengths:
352-842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]