GgaINT0049593 @ galGal3
Intron Retention
Gene
ENSGALG00000011141 | E1C6K8_CHICK
Description
NA
Coordinates
chr7:23383007-23385643:+
Coord C1 exon
chr7:23383007-23383086
Coord A exon
chr7:23383087-23385438
Coord C2 exon
chr7:23385439-23385643
Length
2352 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
3' ss Seq
CCTTTTCCTGTTTGCTTTAGAAT
3' ss Score
10.48
Exon sequences
Seq C1 exon
GGACCTGTTCTCAGGAAAGTGGAGTGACTTGTGAAGATTGTTTGCTTTCCGGACCGCACTGTGCTTGGTGTTCCCAAGAG
Seq A exon
GTAGATGATACCAAAAATTTCAAAGTAAAACTTGAAATGTTTGTAGTGGCTCTGAGTGATGAAGTATTGACTTAATTGGGTTAGCCCGTGGTTTTGTAATGCATGCAGCGCTTGGTGAAGCCTTCCTGGGAATCCAAAGGAGAATTCAAGACTTTAAGTTGCATTATTATCTGTGTCGTATCAGCTCTGGCTGATTTCAAATATGACAATAGTGTTAGTTTTCTAATCAAGTATGACACAGGTGTGAGTGTTTTGTCTAAAACACAGGGCTTTAACATAAATATTTGGATTTGTTTCCTACAGGTCTCTTGCAGGCTTTCTGTGTAACTCCGGGCAAGTCAATTAACATCTGTTTTTAAAATCTTTCCTGTAAAAGATGATAAATACCCCCATAATTCCTAGCTAATATTTGAGGTCCTAGTTCATTAATGCTGGCAGGAAAGTTAGCTGTCACAATTTAAAAATGGCCAGAAATAGTGAGAAATTGAATATTTTTCATGATAGCAGCAGAACTGTAAATCAGAAACTATTCCTAGCTTTTAAAAATAGCACAATAACACATAGGGTAGGAATACCGTACTGCTGTGTGAAGTAACTCACCAAGATCAAAGAATACTTTTCTTGAAGAGGATTACTAAATATAATTCAGCAATTTGTATATGTTACTATGGTGGGGGGAATAAAAAAAAACTATGCACTCAAAAAAGAAAAAAAGAAACCCACCCAATTTACAACATCAAAACATTTGTGTGTTTTCAGGAGTTTGTTTGCACTCAACCACCAAAACAGGATTTTCTTGAAATTTGATCAGGATTTGAAATACTGCCACATACATTCAGAGAATGAAAAACAATGTGTTGATTTAAAAAATCCTCTATAGGATAATGTGCCTTCTAGGTATATTTGAAACATGAGTTTGACTCTGCACGCATGTTTCAAAAAGCCAACAATTGAAAGTGTGTAACTACAGGAGGTGGTATAGTTCTCCCTGTGAAAGCTCTGTAGCACTGTTTGATCTGTGTGCACTGTAGGAAAGAAGTGGTTGGTGAGAGTCTTCTCTGAGCAAGGTCATCAGATTTGGTCTGAAGCAACATAAATTGCTGTTTCCGCCTGTGTTGCTTCCACAAAAATATGTGAGATCTCTGACAAGTGTCAGTCATGAGGGATGAAGTTTTGGTTGCGAGGAGAGGCTGAATTCTGTTCTTAATAAGTTTAAAGTGAATATGTTTTATTTTGGGTAGAAAGTTCCTCAGTGACTGAATTCAGAGAATATTTGTGGTGTAATGGGCAAGCAACCTCAGTTCAGCCAAACCTGGGAGAAAAAAGCTGTCCTATACCATGAGCTATGGCCATCAGTAAGGCATTGAGTGTTCTGGTATTAGTTCTCCCAGGCATTTCCCAGCCTTAGCCAAAAAGTCTTGTTGCCCACAGCAGCTTTCAGTTCAGGAGGCAGCTGACTGACCTACAGGTCTAAATTCTAGACATAGCTCTAGGAAATGGTAATAAGCCATTGAAGCCTCTGTGAAACAAACCACTAACTTCACTGGTATGTGAGGTAATGCCCATGTTGTATTTGAAATATGAGTTTGCATTGCAGAAGAATTGTATATCAAGTGCTCTGAAATGAGGAACCAGAACCAACTGCAAGATATTCAGGCGGTATCGATAGGCTTGCAGTTCCCTCCATGGGGGAAGAAGGTGGGGGAGGATGCTGAGCCAGATGTGAGTGGACATATCAGCATAGTGGGAGCCCCATCTGCCCTGGAGAGAGAGGGAAGCTGCGGTGTTTCTTGGTTCACTGAATGAGTAAAATGAGGGCTGAGGAGAAAGAATAGGTCCGAGGAAAACAAAGAGTCCAGAGAATTCTGAGCACCCCACCTCCAGTTTCTCACAAGATCTGTAGAAATTTATTATTTGCTTTCCTGTTATTAAATGATGTTCCACCAGCAGCTCAAAACTGCTTAGGAAAGGCTGGTGAATTTGTGAGATAGTCCCGTAAGTGATTTGCTTACAACAGCAGGCTTGGAAGGGCTTTGTGTTCCCGTTCCCAGAGCTGCAAGAAGTCAAGAGAGAGTGGCATAATTCCCATTCCCCAACAATAGAGTAGTTTTTCCCAGGACACCAAACTGGTGTAGGTTACATTAATTATACACCTGTGGGATGTGACCCCATGAAGGGCAAATTTAGATTTCGGTGTCCTCTAGATCTCCTTCTGCACTAGTTTGCACTCCTTGTATAACCTACGCATTTGTTTCTAATTCCTCGGCATTGGATTGACCTTTTGTCAGCTGCTGCTGGTGGCTGGTCAGTAAACATATTTAACTCATCCATCCCTTTTCCTGTTTGCTTTAG
Seq C2 exon
AATTACACAGATTCAGCTGGAATTCATGGGAGGTGTGATACCCCAGAAAATCTTTTGTCAAAAGGATGCCAGTTGCATTTGATTGAATTTCCCGTTTCAGAAGTGGAAATTCACAGAAACAAGCCTCTAACTATAGCAACCCAGAAGGACAATTCTGATGTCACTCAGATTTCTCCTCAGAAATTAACACTCAGGCTGCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011141:ENSGALT00000018170:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(4.0=63.0)
A:
NA
C2:
PF0036213=Integrin_beta=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]