GgaINT0049729 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:34757987-34758993:-
Coord C1 exon
chr7:34758889-34758993
Coord A exon
chr7:34758095-34758888
Coord C2 exon
chr7:34757987-34758094
Length
794 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TTTAAATTCTTCTCCAACAGAAA
3' ss Score
8.37
Exon sequences
Seq C1 exon
ATACTGTATAGAGAGGCTTGGGACAAGGACAAAACTCAAGTTCACATCATGCCTGATACTCCTGAAATTTTGTTGGCTAAATCCAACTTAATCAACACAAGTGAT
Seq A exon
GTAAGTATGCCTCTATAACATTCCTTTTATGCAGTTTGGATTTACCCTTTGTAGCTGTAGTTTAAAATGGAGTGGAGCAGGTTCAGCAATCTAACGATTGTTAGCATACCTGTTAAAATTGTTATGCATTGAGATACCCGAGTAAATTGCTAAATTTTAAAGTGGAAGTGAAATTACTAGAAAAGAAAGCAAACCAAGAAGTTACTCAATGCAAGTTTGATGCTTTCTCTTTCATCCTTACAGATCGTATTAACATAATAGATACATTTTCAGTAGTTTTTTACTAAGACTGTCATTCTTGTTTTGGTAAAAGTCTGTTATATCAAATTATCTTCTTAGAATTATTTAGCATTACTTTACATCAAATTCTTGGTTATAGTGGAACAAATATATCAGCTACATGTAAACAGTAAAGAAACGTTAGCTGTTGTATCGTAAGTCTGGAAGAGAAATAATTATCATTGAAATGGAATGTAGCAAACAATGGGGTTGTATTATTCACCTCTGTAGAAGACTATTATTTACTCAGATTTATATTTCTAGTACAAATTTGCTCTCAGATGAGTTAATCAGAAAAAATAAACTTGGCTTGATGTATTTCATATTATCAGTTACAAAATGTACATTATGTAAGCTATGGAATGAAACCATATTTGAAATCTGATTATTCGTTTTCAGTAATAGATGGAATAAAAAGGTAGTATTTTGTGGGTTAGATCAGCTTACCTTTTTCCATATTGGAAAACACTCCACAGCCGTTATCATAACAATTACTTTAAATTCTTCTCCAACAG
Seq C2 exon
AAACATTACAAGTTAGGATATGAAGAGTTGAGGAGGAAAGGCTACGATCTTCCTCCTGATGCTATACCCCTCAAGTCAGCGAAGGCATCCAGAGACATCGCCAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028654:ENSGALT00000020410:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTATAGAGAGGCTTGGGACA
R:
TCACTGGCGATGTCTCTGGAT
Band lengths:
210-1004
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]