GgaINT0049741 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36873219-36874081:-
Coord C1 exon
chr7:36873977-36874081
Coord A exon
chr7:36873327-36873976
Coord C2 exon
chr7:36873219-36873326
Length
650 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTGTTTAATTCTTCACTTAGAAA
3' ss Score
5.79
Exon sequences
Seq C1 exon
CGTTTGTATACTGAGGCCTGGGATAAAGACAAGACACAAATTCACATAATGCCTGACACACCTGAAATCACACTGGCAAAACAGAATATGCATAACTACAGCGAG
Seq A exon
GTGAGTATGTTAGATCTCCATAGGTTCTGTGTCAATATTCTTATAAACCTAATGCAGATATTTTTATAGATCAATTTCTTTAAGTAACACCAAATATCTGTAATCAAAATTGTGGCTTTAGAAGCATAATTTGTAATACATCTGTGATCTCTGCTTTGAATAATTCTATGAAAACTGTGTCTATGGTGAATTCTGGGGTGTTCTTTCTGCCATGATAGATATTGCTAGAAAAGTGCAAAATTCATTCCAACGTTAGAGATGCAAAAAAAAAAAAATCCTTCACAATTGTGATGATTATTGTTCCCAGTGTTCAGTGTTAGTTTAGGCAGAAATATTCACATCAGTGGGAGGTGGCTTTAGAAAGCTTTATTCTACTTGTAATTGAAGGAATAGTTTATCAAGTTGTAATCTATGTCATGTTATTAAAGTTTAGAAAGAAAAAGATTATTAGTGTATTTAGCAAAGATCTTCGTTCAGTATAGATTCATATGAGTTACTGATCTGGAGATTTGAACTAAGGAAGTTAGATAAAACCAGGATAGAATAAATCTTAACAATTTTTTTTACCTACTCGCATGCAATTTGTTTTGCACAGAATGCAGTATATGGAGTTTAGCTACATTAATCCTGTTGTTTAATTCTTCACTTAG
Seq C2 exon
AAACTGTACAAGCAAGCCATGGAAGAAGCAAAAAAGAAAGGCTATGATTTGAGAAGTGATGCTATCCCAATTCAGGCTGCCAAAGCATCCAGGCAAATTGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTGTATACTGAGGCCTGGG
R:
GCAATTTGCCTGGATGCTTTGG
Band lengths:
206-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]