GgaINT0049820 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36815964-36816634:-
Coord C1 exon
chr7:36816542-36816634
Coord A exon
chr7:36816057-36816541
Coord C2 exon
chr7:36815964-36816056
Length
485 bp
Sequences
Splice sites
5' ss Seq
TCGGTATTT
5' ss Score
4.52
3' ss Seq
AATTCTCTTGTACCTCATAGGTG
3' ss Score
7.77
Exon sequences
Seq C1 exon
GTCTTGTACAAAGAGGACCTGGGGACAGGTATCCCAACACCTGTTACTCCAGAAATAGAGAGAGTCAAACGCAATCAAGAACACATTAGCTCG
Seq A exon
GTATTTAAGAAAAAGATGATAACAATTCATTTTTGCATAACATCCTAACATGTACTCCTTTTTTCTTTAGTGATTTAAAATCTCACCTCACCCCACTCCTTTCTTCCCTCTGTCAGTACTTTTAACTTAATTCTTCCACCTTTTTGTGCTTTAACTTTTTGGAGTGATTTACAACTTTACATGCATTTCTTTTTAAGAACCGAAACCTTTATAAGCTGTGAAAACATTCTGGTGTTCCTCCCTGTGTTGGTTTTATCTTAACGCTTTATCTCCTGGGATATGTAGCCATATTTACAGAATAATCAGCCCCTTCCTTAATATTCACCTCTAGAACAAGTGTGCAATTAATGAAAAAGTGACCCTAACGCTAAACATAACTCACAGAATAGTGAGACGTAATTATTTTGCCTGTGTTGAATGCTGGGTTTTTGTATGTTCTTTGTTTGGTCAGGCTTTTTGTATGGAAATTCTCTTGTACCTCATAG
Seq C2 exon
GTGGCATACAAAGAGGGCTTAGGGACGGGCATCCCAACCCCGGTCACTCCGGAGATGGAGAGGGTCAAACGCAACCAAGAGAACATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:132
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=NA C2=0.968
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(28.0=22.6),PF0088013=Nebulin=PU(64.0=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(28.0=22.6),PF0088013=Nebulin=PU(66.7=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAAAGAGGACCTGGGGA
R:
CGAGCTAATGTTCTCTTGGTTGC
Band lengths:
182-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]