GgaINT0049821 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36812123-36816056:-
Coord C1 exon
chr7:36815964-36816056
Coord A exon
chr7:36812216-36815963
Coord C2 exon
chr7:36812123-36812215
Length
3748 bp
Sequences
Splice sites
5' ss Seq
TCGGTATAG
5' ss Score
3.75
3' ss Seq
CATGGCCATGTTGTCCGCAGGTG
3' ss Score
11.5
Exon sequences
Seq C1 exon
GTGGCATACAAAGAGGGCTTAGGGACGGGCATCCCAACCCCGGTCACTCCGGAGATGGAGAGGGTCAAACGCAACCAAGAGAACATTAGCTCG
Seq A exon
GTATAGCCCAATAAAGCAAGCCCCACCCTGAGAGTACAAATCCCATCCCTTTAACTGCTCCATATTAATTTTTTCTTTCAGTTTGTTTATGAATTTGAACAACCTTTCCTTAATCAAGTCACTAAAACTTGCCATATTCCTATACTGTATTTTTTTTCCCCTCAATCTAGCATAACTGCCATTAAATTATCTCAGCTGTGAGATTCAACCCCTCATTTACTTAAATCAGTTAAGCAGTGCCTTATTCCTTCTTCCCACTCACACAGTGACAGTGTGGGTGACTCCTCTGTAGCAAAGCTGATCCTTCTAACGCTCTTCAGACTCACCGTGCTGGTGCAGTGCTAAAGCAAAATGAACTCTTAACACTTCCTGAATCCTAAGTTCCTCCAGCCTAATGAAGCCGGAGTGTGTCTGCCTCTGCGTGTTTTTGCTTGTTGGATGCTTTCTTGTATCCTACAGGTCTGTGTAAGAAAACCTGGTGGCATCCCTGTATCACTGTAACGTGAATAATGGAGAAAATTGCACAACTAAGGGGCAATGGCTGCAGTAATGCATTTCTATCCAGGACTGCTTCTGGTTCTGGCATGTTCCAGTCAAGTCGCTATGCACAATTTGAAGTGCCCTACTTTGTAACTTCGTTGTTTATTTCTGTTTTAATTGCAGTGACATAGGGCTGATTTTGACTCCAACATGACAGATGTGAAGTTCAGACCTGAACTGATGACTTCTGTAGTAAAGTTCTGAGAAGCCCCTGTAGTCACACTGTGTGCTACATTTAATTGTCTCTGTGATCATCACTTCTCTCTTTTATACTTGTGAGGGGCAGTCCTAGAGGGAAAGCTGACCATTAACATCTGTTGTTAAGTAAGGAGACTGAATTCCTGACAGAGGAACTGACAGCATTCTCCTGTCAGCAGACTGACAGGAGGGGGAATGGCTGTTTATGAGGGTGGATAGTGGTAGGACGAGGGGGAATGGTTTTAAACTGAGACAGGGGAGGGTTAGGTTGGATATGAGGAGGAAGTTTTTCCCCCAGAGGGTGGTGAGGCACTGAACAGGTTGCCCAAGGAGGCTGTGGATGCCCCATCCCTGCAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGGCTGCTGGTTGGCGACCCTGCACACAGCAGGGGGTTGGAACTGATGAGCACTGGGGCCCTTTTCAACCCAGGATGTTCTGTGATTCTATGATTCCTTGTGGAAGGAGGCAGAACTGCAAAGACGTTAGCTGTTAGCTGATTATTTTATTGACTTTTTTCTGCTAACTTTTGAACAAGGCTGACAAAATTGTTTTTCATACTTGGAGGTTTCAGTGTATTAAATTTGTTCTCCTCTCTCTCTCTCTCTCTCCTTGCCCCATCCTCCTCCTTTCCTTTTCTTTCCTTACAAACACCCCACAAACCAAACCAAACAAACCCTACCTCCCTGTTGCCACACAGGTGTTGTACAGAGAGGGGCTGGGAATTGGAACCCCAGTGCCTGTGACCCCTGAGATGGAGAGGGTCAAACGCAACCAGGAAATCTTTAGCTCGGTACTCTTCCCCTAAATCCAGAAAAATGTTCCCTTAGCTTCATTTTAGAAGAACTTTATAACACCTGTAAATTAACTTAGAGTGACGCTCCCTTCCTGCTGTTAAAATTCAGTCTGTCTTATATTTTATCCCAAAATTTTAAAAGACATTTCTAATAATCATAACACTTAATGCTTCCTGTCCTTTCATTTTTAAGACTTTTATTTTTCTGATTCTTATTTCCTTAAAAATTCCTGCTTCGCCTGTTTGCTCAATTCCATTCTTCTGATGCTTTATTGCTGTGTCGAAGCATCCCTCAGACCTCTCAGGAGCTCGGAAGCTTTCCCTTGGATTGATCACAATTGTTACCTGATTTACAACTCCTAATTTTTCCCTCTTTGTAGTGGATGGAGTGGGCACACAAATTAACCACGCTCAAATTCAATCTGTCTTTTATACTTTTTTACACTGCTGTGTTACCATACAGGTGTTGTACAAAGAGGACGTGGGGATGGGAACCCCCACCCCTGTCACTCCCGAGATTGAGAGAGTCAAACGCAATCAAGAACACGTTAGCTCGGTATCTTCAATGTGAAAAGAAGGAAATTCCCTCTTGACTTATTTAAAAATACTTTTAACACCCAGAGTTACCCTTGTTCCCCTGTAATCAACTGACACCAAAAGCAGTGTCCCATTCCCCTTGTTTTGGTGCTGTTTCCTACATAATGATTGCTTACCACATTTTTATCCCTTGGTTTTGATTAATTCTCTCAATTATGGTAACTTTTAGATTCTGTGTTCCAATCTGTTTTTATTTTTTTTCTTTACTCTGAACTTTGGTTGTCATTACTTTCTGCTTTTCCTTTCATTAATGGCTTCAATCCTTGGTTCTTGGTTTGATTGTACTGTGTGTTAAAACAGAACTGTCTCTGCTCTGATGCAGACTGTGGGATGAGCTCGGTGCCCTCATACTTCTTGGTGACATTCATGTGTGGGGGTGAAGGAAGCAAAGATCGTTCCTTTGTTCCTTTTGTTGTCCTTCCCACCTTGTTGTTTGAGGAAGCCTTTACCATGGCTGCCCAATGGCAGCTCCCAGGCCTGCAGCCATGCTGGAACCAGTTGGGCAGGGCACAAAACCACAGCACTGGGCTGTTCTGTAGGGAGAGGAAGGTTACAAGCAAGGCAGGGGAGCACTGCTTTTTGATTTGTATGGGCTTTCTTAATCTGTTTTGCAGCCCAGAAAAACACCTCTCTTGTGTTCCACCTGGTCTCTCAGCAAACAGTGTTACTGTTGTCTGCTCATTGCTCTCCCTTCTCTCATGGCCATGTTGTCCGCAGGTGTTGTACAAAGAGAATGTGGGGATGGGAACCCCCACCCCTGTCACTCCTGAGATGGAGAGAGTCAAACGCAATCAAGAACACGTTAGCTCGGTATCTTTCAGTGTGAAAAGAACATTCCCTTATGATTCAGTTAAATATTTTTAACACCCAGAGTTACCCTTGTTCCCCTATAATGATCAACTGACACCAAAAGCAGTGTCCCATTCCCCTTGTTTTGGTGCTGTTTCCTACATAATGGTTATTTACCATATCTTTATTCCTCTGTTCTGATTAATTCTCTCGATTATGGTAACTTCTAGATTCCATGTTCCAGTCTTTTTTTTTACTCTGAACATTGCTTATCTTTACTGTCTGCTTTTCCTTTCATTAATCGCTTCAATCCTTGGTTCTTGTTTTTTTTTTTTTTTTTTTTTTTTTCTGCTGGTTTTGCTGTGTTAAAACAAAACTGTCTCTGATGCACACTGTGGGATGAGCTCAGTACCCTGATAGGTTTTAATGGGTGGGGGTGAAGGAAGCAAAGATCGTTCCTTTGTTCCTTTTGTTGTCCTTCACACCTTGTTGTGTGAGGCAGCCTTTACCATGGCTGCCCAATGGCAGCTCCCAGGCCTGCAGCCATGATGAAACCAGTTGAGCAGGAGATAAAATCACAGCATTGGGCTGTTCTACAGGGAGAGGAGGGTTACAAGCAAGGCAGGAGAGCTTGCTTTTTGATTTCTGTGGTGTTTTTTTTTATTAATCCATCTGTTTTGTAGTTGACAAAAACACCTCTCTCTTGTTCCACCTGGTCTCTCAGCCAGCAGTGTGTTACTGTTATCTGGTCATTGCTCTCCCTTCCTTTTCTCATGGCCATGTTGTCCGCAG
Seq C2 exon
GTGTTGTACAAAGAGAATGTGGGGATGGGAACCCCCACCCCTGTCACTCCTGAGATGGAGAGAGTGAAACGCAATCAAGAACACGTTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:133
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(28.0=22.6),PF0088013=Nebulin=PU(66.7=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(59.3=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]