GgaINT0049822 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36806456-36812215:-
Coord C1 exon
chr7:36812123-36812215
Coord A exon
chr7:36806549-36812122
Coord C2 exon
chr7:36806456-36806548
Length
5574 bp
Sequences
Splice sites
5' ss Seq
TCGGTATCT
5' ss Score
3.45
3' ss Seq
TACTCCCTTGTATCCTATAGGTT
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTGTTGTACAAAGAGAATGTGGGGATGGGAACCCCCACCCCTGTCACTCCTGAGATGGAGAGAGTGAAACGCAATCAAGAACACGTTAGCTCG
Seq A exon
GTATCTTTCAGTGTGAAAAGAAGGAAATTCCCTTGTGATCTAGTTAAAAATAACCGTAACTCTCAGAATTACCCTTATTCCCCTATAATGATCAACTGACTCCAACACCAGTGTCCCATTCCCCTTGTTTTGGTGCTGTTTCCTACATAATGGTTGCTTACCACATCTTCATTCCTTGGTTTTGATTAATTCTCTCAATTATGGCAACTTTTAGATTCTACATTCCAGTTTTTTGTTTTTTTTTTCACTCTGAACATTGGTTTTCTTTATTGTCTGCTTCTCCTTCCATTAATCATTTCAATCCTTAGTTCTTGGTTTGTTTTTCCCGCTGGTTTTGCTGTGCGATAAAACTGTCTCTACTCTGATGCAGACTGTGGGATGAGCTCAGTGCCCTGATAGGTGTTGGTGACGTTTATGGGTGGGGGTGAAGGAAGTAAAGATTATTTCTTTGTTCCTTTTGTGTTGTCCTTCACACCTTGTTGTTTGAGGAAGTGTTTACCATGGCTGCCCAAAGGCAACACCCAGGCCTGCAGCCATGCTGGAACCACTTGGGCAGGAGATAAAATCACAGCACTGGGCTGTTCAGTAGGGAGAGGAGGGTTACAAGCAAGGCAGGGGAGCACTGGTTTTTGATTTCTGTGGGCTTTTTTTTGTTTTCTTTTTATTTGTAAACCATCTGTTTTGCAGCCCAGGGAAGCATCTCTCTTGTGTTCCACCTGGTCTCTCAGCCAGCAGTGTGTTACTGTTATCTGCTCATTGCTCTCCCTTCCTTTTCTCATGGCCATGTTGTCCGCAGGTGTTGTACAAAGAGAATGTGGGGATGGGAACCCCCACCCCTGTCACTCCTGAGATGGAGAGAGTCAAACGCAATCAAGAACACGTTAGCTCGGTATCTGCTGTTTGAAAAGAAGGAAATTCCCTTGTGATCCAGTTAAAAATAACCATAACTCTCAGAGTTACCCTTGTTCCCCTGTAATCAACTGACTCCAACACCAGTGTCCCATTCCCCTTGTTTTGGTGCTGTTTCCTACATAATGGTTGCTTACCACATTTTTATCCCTTGGTTTTAATTAATTCTCTCAATTATGGTAACTTTTAGATTCCATCTTCCAGTCTGTTGTTCACTCTGAATATTGGTTGTCGTTACTTTCTGCTTTTCCTTTCATTAATCACTTCAGTCCCTGGTACTTGATTTGTTTTTTCCTCCTGGTTTTGCTGTGAGTTAAAACAGAACCGTCTCTACTCTGATGCAGACTGTGGGATGAGCTCGGTGCCCTCATACTTCTTGGTGAAGTTTATGGGTGGGGGTGAAAGAAGTAAAGATTGTTCCTTTTGCATTTTCCTTCCCACCTTCTTGTGTGAGGCAGCCTTTACCATGGCTGCCCAATGGCAGCTCCCAGGCCTGCAGCCATGCTTGAACCAGTTGGGCAGGAGATAAAATCACAGCATTGGGCTTTTCTACAGGGAGAGGAGGGTTACAAGCAAGGCAGGGGAGCGCTACTTTTTGACTTGTATGGGCTTTCTTAATCTGTTTTGCAGCCCAGAAAAACACCTCTCTTGTGTTCCACCTGGTCTCTCAGCAAACAGTGTTACTGTTGTCTGCTCATTGCTCTCCCTTCTCTCATGGCCATGTTGTCCGCAGGTGTTGTACAAAGAGAATGTGGGGATGGGAACCCCCACCCCTGTCACTCCTGAGATTGAGAGAGTCAAACGCAATCAAGAACACGTTAGCTCGGTATCTTTCAGTGTGAAAAGAACATTCCCTTATGATTCAGTTAAATATTTTTAACACCCAGAGTTACCCTTGTTCCCCTGTAGTCTACTGACACCAAAAGCAGTGTCCCATTCCCCTTGTTTTGGTGTTGTTTCCTTCATAATGGTTACTTACCACATTTTTATTCGTCTGTTTTGATTACTTCTCTCAATTATGGTAACTTTTATTCTTTACTGTCTGCTTTTCCCTTCATTTAATCGCTTCAATCCTTGTTTCTTGGTTTGTTTTTTTTCCTGCTGGTTTTGCTGTGTTTAAAACAAAACTGTTTCTGATGCAGAATGAGCTCAGTGCCCTGATAGGTGTTGGTGGCTTCAGTAGATGGGAGTGAAGGAAGTAAAGATTATTTCTTTGTTCCTTTTGTGTTGTCCTTCACACCTTGTTGTTTGAGGAAGCCTTTGCCATGGCTGCCCAATGGCAGCTCCCAGGCCTGCAGCCATGCTGGAACCAGTTGGGCAGGGCATAAAACCACAGCACTGGGCTGTTCTGTAGGGAGAGGAGAGTTACAAGCAAGGCACGAGAGCACTGCTGTTTGATTTCTGTTTTTTTTTTTTTTTATTAATCCAAGTGTTTTGCCAATGGCAGCTGAGAAGAACACCTCTCTTGTGTTCCACTTGGTCTCAGCAAACAGAGTGTTACTGTTATTTGCTCATTGCTCTTCCTTTCTTTTCACATGGCCATGTTGTCCGTTTTTGAATACAAAGAGGACGTGGGGATGGGAACCCCCACCCCTGTCACTCCTGAGATGGAGAGAGTGAAACTCAAAAAGGAACACGTTAGCTCGGTATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATTCCGTGTGGGTTTCTCCTGATTTTATCCCCTTTCCCTTTAAAACTGAACTCTTTGTGGTGTGATCCCAACCAGTGGGAATGAGCTCTGTGTGATGGTGCTCTTATAGGGGCTGGTTTAACCTGCTGTGTGTGTGCTGCTTTTGGAATGGGTAACCGAAACAGAGTTATTCCTTGGTTCCTTTTTGGTTGTCTTTGTGGCCTTCCTTTAGGAAGTCTTCATCCACTATTGCAGTGGGGTTTTCTTATAGGTCCTGAGAAGCAAACTCTGCAAAGTATGTCATCATTTTGAGGAAGGTTTTGATCTTTCATCCCAAGCTTTGGCTCAGGGCAACCTTGAGTAACACTCGGTCTCTTTTCCCATTAAGCTGTGTGCTGCTGTTGTTCGCCTGTTCCTTTTGGTGTTTTAACATAGCCGTGTTACCCACAGGTGTTGTACAAAGAGGAGCTGGGGACAGGGACCCCAATACCTGTCACTCCTGAAGTTGAGAGAGTCAAACGCAATCAAGAACACATTAGCTCGGTACTTTGTGGGGGAAAAGATGGGTTCCCCTTAACCCCACATAAACTGAACTTTTTAATCTGTATTAAAAACGGAACAGCTCCACTCCTTCCTTCCACTTAATCAGTTTAATCAAGTTAAAAAAACATCCTTTCTCTTGCACTGTATTTTCCAGTGTTACTTACGTTCCACTTCTTCGTGTGTGTAATTATTTACATGATCCTAAATGTCTTTAACCATTTTGCTCCCTGTTTCAACGTCCTTTTAATGTATACTTGTGTGTGTTGTGGTGTTGTTTCTCGTAATTGCTTTGTAGTGCTGTTGTCATGGAATCAGGAGGATTCCAGCAGGCTCCAGGGCTGTCTAGAAGCTCCCCTCAACCATGGAGATGCATTTGTTCAGTGTTACTGTGACGGCTTCTGGGTTGGGTTTGTCGTACCTATAAGATGAAGGCATGGACACGTTTGCCATCAGACCCTATGGGTGTAATCCAAGCCTTCAGGGCAGCTTCTAGGGCACAAGAGAGCAGAATGCTATCCACGAGACTCAGATATTTGGCTTTGTGTTGTGTTGTGATTATTTCTGCGCTCTGATTTCTTTTGGATGCTTCTTGTTGCTGTGCAGGTGTTGTACAAAGAGAGCGTGGGGACGGGGACCCCCACCCCCATCACCCCAGAGATGGAGAGGGTCAAACGCAACCAAGAGATCTGTAGCTCGGTATTTGCCAAGAAAAAAACATGTCCTTTAACTCCATTGAAATGAACAACTTAACAGTTTGAATAAGTGGACGTTGTGACACTTACTGGAAAATAATGCTGACCCTAGCTCTAAAGCAATTTAATTAAGTGATCACTTCTTACGTGGCTTACTGTGGCTTACAATGACTGTGTTAACTTGATAGTTTTATTGGTTTTAAGGCTTATTTTAACGCCTTGTTCTAATCCTAAAATCTTATAACAGAGTTCCTCTATTTTCTCTGCAGTGCTGACGTACTTTATGATAATTTAAATATCCGTAACATCCTCAGCACAGTGTTTTGTAGTCTCATTTACAGTACTTATCTATTGAGCCATCACTTTATGCCAGGCCCTACTTCTCTACTAAAATACTGCTGTGTACCTTGACACGTATCTATAATACCTTGGCCCTGTGATAATGAATACAAGGAAAAGATGCCTTTGTGTTTGTCTACAGAGAGACCTGTTTGTTTATTGTTGGCTCCTTTCTTATGTCTCATAGGTGTTATATAAGGAGAACATAGGGAAAGCCACTCCAACCCCTGTGACTCCTGAGATGGAGAGAGTCAAACGCAATCAAGAGATCATTAGCTCGGTACTCCTACAGGAAACCAATTCCTGAAGACCTGATGTGTTTAACACACAGTAGCAGTTTTACTCATCTGTGCTTCCTAACTCTTAAAACAAACCCTGTCAGGTAGCATGAGCACCCCCACTCTGTGCTTGCAAATGGGTTGTAATTTCTCCTCTCCTGTTTAACACTGTCGGAAGCAGGATTTAACTAGAATGGTTTGACCTCTGATTATTTCTTTTTAAGGTCGTTGTTTCTTTGCAATTTAACTATTTCTTGTAACAATCTTGCTTTTACACTCAGTTGATAATGAATTAATGGTAAAGCTCCCATTGCTCCTTTCAGGAGTCGCAGTGGCCCCAGATCTAACCCCGTCCGAAGCGTAATAACCCAGAAGCTGTTATTGTCCGTGGTTGGTTGTGGTTTCTGTGCTGGTGGAAGTATGTTCTTAATGATATCTGGATACTCCCTTGTATCCTATAG
Seq C2 exon
GTTTTGTACAAAGAAAATGTGGGGAAAGTGACCCCAACACCCATCACTCCAGAGATGGAGAGAGTCAAACGCAATCAAGAGATCATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:134
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.806
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(59.3=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(57.1=51.6)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]