GgaINT0049823 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36805522-36806548:-
Coord C1 exon
chr7:36806456-36806548
Coord A exon
chr7:36805615-36806455
Coord C2 exon
chr7:36805522-36805614
Length
841 bp
Sequences
Splice sites
5' ss Seq
TCGGTACCT
5' ss Score
4.27
3' ss Seq
ACGTGTTCTGTATCCCACAGGTG
3' ss Score
12.18
Exon sequences
Seq C1 exon
GTTTTGTACAAAGAAAATGTGGGGAAAGTGACCCCAACACCCATCACTCCAGAGATGGAGAGAGTCAAACGCAATCAAGAGATCATTAGCTCG
Seq A exon
GTACCTTAAAAATAGATATATTTTTTTCCCCTTTGCGCCTATAGTAATGTTAATCAAGTAACATTCTAACTACGTACTGAACACTGACTTTAATTTAGAAAATAGATAGATTTGTGTCTGCGAGTTAATCTCTCCCTTTCTAAAACAAACTTGGCTTTAGTGTGTTAACATTCTGATCCAAAAATTAGGAGCTTTCTACAGCTGGGTTCGTCTCACTTGGGCTCTATCCAGCCAACACCACCAGACTGATGTCCCTGGGAGAAGTGACACTCAGCTCCATCTCTCTGCGCTGTGTCTGTAAGCTGTTGTTGTCCTTTCAGGGGTATTTGACTTTAGTGGGAGAAAACCCAACCCCAAACCCAAACATCCCGTGGGAAAAACCCCATCTCTCTGAGATGTATTGCTCGAGGTGACCTGAACCAGAACCCCGCCTAGGTGGTACCAGGGATGCTTTTAGGTAGGACACCCACCAGGCAGGGTTTAGGCACAGAGGGGATCCTCTCCTTGGCCTGGATCATGACCAGCAGGGTAGATAGAACAGTCTTTAGTTCTTGGGGTCACAGGTGGCTTCCTTGAGCCTGTGGAGCCAAGGTTGCAGCTATAGCTGGATAGAGCCCTTCATTTTAACCCAAACAACAAAGTTTTAACAAGCTTCTCTTTTTCAGTTTATTTCTCTTACCCCTCCCACCAGCTTTAGATGTTTGGCTTTTTGCGGTGATCCATACTGTAATCTGCCATTACTGCTTTGAATTTTGATAACTAAGCAATACCCTGAGTTGGAATCCTTTTGAATGTTCTTGCTTCTTTGTGAGATGCCGGATACGTGTTCTGTATCCCACAG
Seq C2 exon
GTGTTGTACAAAGAGAGCTTGGGGAGAGCAACCCCCACCCCTATCACTCCCGAGATGGAGAGAGTGAAACGCAATCAAGAACAGATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:135
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.806
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(57.1=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(57.1=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAAAGAAAATGTGGGGAAAGTG
R:
CGAGCTAATCTGTTCTTGATTGCG
Band lengths:
182-1023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]