GgaINT0049898 @ galGal3
Intron Retention
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18789516-18793839:-
Coord C1 exon
chr7:18793763-18793839
Coord A exon
chr7:18789519-18793762
Coord C2 exon
chr7:18789516-18789518
Length
4244 bp
Sequences
Splice sites
5' ss Seq
GCACAATAT
5' ss Score
-18.87
3' ss Seq
CCCAGCCTTCNNNNNNNNNNCAT
3' ss Score
0
Exon sequences
Seq C1 exon
ATTCTGTTTTAAATGATTTTATTATGATGCACTGTGTTTTTATGCCAAATAGTCAGCTCTGCCCAGCCTTGATGGCA
Seq A exon
CAATATCCTTTTGTGACGGATAAGTTATTTTCCTTTTACAGCTTTCCATACCATTCATTGGACACGAGCTTTTCTCTCTCAAGAGTTAAATTGCATTTCATGGAGGCTGTGCCTTTTTGGTAGGTTCTCAGTATCTGACTGGCAGCTTGTCTTGTAGCTCAACAACTCTGAAATGGGAAACTCATGAAACAGCCATGATGAAATGCAGGCCTGGAGCATGGTGATTGTATCTTTCCTGGGATTATTGTTATACCAAGGAAAAGAAACCTACTTTCCCTTCACCAGATAGCTGTTCAAGGCCAGGTTGGTTGGCCAACTTGGTCTAGGGGAAGGTGTCCCTTCCAGCCAAAGCAGTTCTATGATTCTATAATTGAAATTACACACAAGTTTAAATCAGCCTTCCTTTATCCCTCCTCTTTCTGTCTTTCTTGATTTTTTCAGAACCACCACACTAAGATTTTAACTAAAATTACTATGTTTTGGTGATTTCTGTGGTCCGCTTTATAGGTTACAAGCCACAAACTGTCTCAAGCAGAAGAGTGCCTAAACTATTAAAACAGTGAGTAAGTGGTTCCTAGGCACTGTCATAATATGGCTATGAACAATAATATATAATAGTTTATAGGAAGCTTTAACAAGCTGCAAAAAATCTGAATTGAATATGAATAGTTAGAGAAAAAACACTTATATAGCATCAGGAGTTGAAGGTCATTCTCATACTATCTGTGTCTTATGTAGAAGGCATCTCTAAAATTTCCATTGATGAGCTTCTGGCAAGTCATGTCATTCAGAGAGCTGCTGGAGACTGGAAAATTTTCCTTGTGTGTCATGACTTGAAGGAATCAACTGATTGTGAGCATTAAATAAACATAAAATGTTTTCTGTTTCATAGATTTTTGACAAGAGGTATAACTTCAATTTGCTGTTTATTTTTTTGGAATGAGATTGGTGTGTAAGTATGCACTTCTTGAGGCTCAGCAGGGCAAGTGACATCTGGGAAAGCTAACATCCTGAAACTACAAAATAGAGCATCGTGTCCTTGTCTGGCAAGCTAGAGAGAATTCATTCGTGTTACTACTAGCAAGGACGGTAATTGCTTTGAAAACCTTTGGACCCACAAAACTGGTCTATAGAAAATTGTTCATACACCTGCAACAAACACATTTTCCAAAACTCCATAGTTTTAGGTAGCAAAAATATTACAAAATGCTGTTGCTGACAGCTTTGAGAGGAGGTGAAAAGGAAAGGAAAGGAGTTTTGATTTATTTATTTTTTTTCAGATTTGTCTAGGTTGTCTGTTAGTCAGTCCCTTTGAGACTCAGGCTTGTCTGTCCTTCATTATAATAGTATACCTCTGATATCCAATAACTAGGAAAATGAGATGCATAAGCAAAATGCACCCCATTGTTTATAGGGGAAAGGCTTTTCTGAACATAGGCGTTCACTTACTATGAAATCTATTCCAGAGGGGCTAAGACCAGTATGCTGTTTAGTGGGTCATGGCAGGCATCATGCTAATTCCTTTTCAGGTAGGAGGAAGAGGAGGGCTGAAAGTAGTTAGTGTCCCACTGTTTAGTGTCAGCTTTTCCTAGTGCTGAATTATTGTTTATTTTGGTCCGTTCTGAATATGGAAAATCAAACTGTGCTCTGTTGATTGTGCCATTGAAATTTATTGTTAGAGTTGAAAGGTTGCTAACAAAGCTCATCTTTTTTTGAGCAAAATCACAGTACAAAAATGTTTTCTGGCACTGTGAGACTAAAGAGAGATTAGTTATGCTCAGTGAGGAAATTGAAATGGTAAGGGAGAAATAAGAGAAGTGATTCAGTCAGAGACACTGTTTTTGCTACAACTCCCAATTTTGAATCAATGAAAGACTATTTTCTTACACCCACGTTGGCTACTATTTTAGCTGGCAGCATGCAGGTATGAGTAGAGCTAAAGCACTGCAGTGCTTTCAAGCATAGCACAGGGTATACATTTTGGGGTTTTTTTCTTCCTTTTCAGCAGAGTTTGGTCATCTCTATGTTCTTCGAGACTGAAAGGAGTGAATGGGTGCACCATTTTGTTTAATTAACAGTATAGGTTGCTCAGAACTCAGTGTTTATGTTGCACTGCCCCTTGATACAGCTCATTTTTAATCACTAATGTATATGCTTCAATATTAAAGAATCACATACTTTGTTGTTAATTGGAAAGCAAGGAAAATGCTCCCCTGGTCCTGGATCACGTAATAAGCATGCATCCTTTCTTTTCGATCAAGACTCCTTCCCTCTCTACTTCACAGGGATGGAAATGGAGAATTGTCAGAGCTTCAGCTTGTCAGAGGGAAGGAGGATAAGTCTCAAAAAAAAAAAAAAAAAAAAACTTGATATAGAGTAACGCTTCCAAAAGTACACTTCAAAAGTACATTTAGGGTTGTGGTCTTGGGGTAGTACAAGCCTGTGAGCATGTGCGTAAGTTTTCATCTTTTAAGGGCTGTTGTCTAAATACTTTCAAATACCCTTTTACTCTTGGTAGGCAATGGTCCTTTAGCATGTTTGCTTATGAATGTTTAGTCAATTTGCTTTACCACCATGCCAGCAAAATAGCTTGTGTTCTACTGTAATAACTGGTGCTGATTTTACAGAGCTTCCAGTCTAGCTAAATGTTCCCTCACAGAGAGGAACAGACTGGAGAATTGATTCAATTTCCTAGTATGTGTTAGACAGAATTATATATATATACGTGTGCGTGTGTGTGTAAAACTATGTTGCTGTTGATAAATATTTTACAATTATCTGACGCTGCAAGAATACGTGATATTTTACTTCTGATTGTAATCTGCACTGAATCTGTGTCCTGTAGGTCCCATAAAAATGGGAGAACCCTTCACTGACTTTCCCTGTGATAATGTTAATAAAAGAGCAATTAATATAAATGAGCAGTAAAAATACAGAAAAATTACCAGTGCCTGTGGTGAGTCAGTTAATAAGAAAGTAAAAATACATGAAATAATTGCAGTGTTTGAAAAGTAAAAATGGCATGAGTGAAATGACTCAGTGGAATATTAAACTTGCTCCCTGAGACATTAGAGCACATAGCTTACAATATATTATTTACTTACGACCCTTCGGCTTACTTACTCCCATAAATACACTGACATGTTTAGTTCCCTAGTCATTTGAAGCCTTTCTGAATGAAATTAAAATGCAAATTTCTGAAAGTTTGTCAGTCAACTGAGTGCCCCAGTAACCCCTGCATCGTGTTGCATCCCTGCGGGGATTTGGGGCTGGAAAATCATTTGGAAAGTGTGAGTTAATAGATACTTTTTCCCACGGCATTCTATTAGTATAATGTACGTTAACGTTTGTTAGAGAAGAACAGCAGAGATCTTGAAATTATAAATGAGAAGCTTAAAATATATACCTTAGATCACTTTTATTTCTAATTAATATTTAAGTTTTCTAATTAATATTTTAAAATCTTGGAAATTGAAATGGAAATGGCAGTTTGAAAGAATACTGGACCTCACTATTCTTGTAATGTTGACACTTCAGCATGAAAAAGGTCAATTAAATGTTTCCACCTTTTCTTACTGTTCCTTACAAAATAACTGTCATGAAGTGTTTCCCAAATATCCTGTAATTGTTGTTAGAATGGAAACTTTGAATTTCCTCATGTATAAAGGGAAGCTACTACAATAATTATTTGTTTTCACCATATCTGTGGTCAATTTAGACTGCGAAATGGGTTCTCCTACCATAATGGGATTGAAGGTTCACCCTGCTTTGTGGTAGCTCCTGTAAATAAAAGACGTGGCACTGATGGTTCATTCCAGATTCACACTGGAATTGTGTATAAATACAAGTGACATTTTTTCTTTTTCTGCCACAGTCTCCAAACCAGAACAGGGAAGAACAGCCTTCTTCAGTCTTAACCATTAATTCTGCTCTCTGTTATTCCGAATGTCATTTCTGTTCTGCTCCTCTACAGCAACTTTCTCTGTAGTGGCATTGTTCATTCCTGTCCTCTTCAGTGACCTCACTGTCTTTTTACTTTATAGTATGAATATTAAAGGTTCACAAATCTTTATGCTAGCCACAGTTAGAAATCAAAAGTATGTAGTGGAAAGATAGGTTTGAACACCCTGAAAATGTGTTGTTGGGAGTCACTTTGTAAATTCATACTGGTTCTGATACTTTCAATCACTGATGGCTTTCCTTGACACCATGGCACTTAACATGCCCAGCCTTCNNNNNNNNNN
Seq C2 exon
CAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357:ENSGALT00000015238:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(22.7=100)
A:
NA
C2:
PF0061815=RasGEF_N=FE(0.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]