GgaINT0050126 @ galGal4
Intron Retention
Gene
ENSGALG00000012584 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr7:36201444-36203046:+
Coord C1 exon
chr7:36201444-36201553
Coord A exon
chr7:36201554-36202932
Coord C2 exon
chr7:36202933-36203046
Length
1379 bp
Sequences
Splice sites
5' ss Seq
CAAGTTAGT
5' ss Score
4.22
3' ss Seq
TTCTTTTGATTTCCTTTAAGGCA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GTTCTTCTTTGGAAGCGGTAACTACTTGTGAACTATGTAAGGAGAAGTTGCATCTGAATCTGGAAGACTTCGACATTCATGAACTCTATAGGGCACATGCAAATGAACAA
Seq A exon
GTTAGTATATTTTGCTTAGTTTGCTACGTTTTGATTTTGTGCTGGGAAGGCATTCCCCTTTAGGAAATTGTATTTCTCCTTTTCAGAAGGACAGTTGAACACATAAGTAATGAAACTGTGAAACAGATCTTTCTTTTGAATATTCAGACTAATTCTGTCGTTCCACTCTTTCCTGTTACTGAGCTTTCAGTAAATGTAATACCTCTTATCCTTTTATCCTTTACTTACTTGCCAATCTGCAGATCTGTCATCTATCTTTGCCAGTCTAGCGTCTCTGCAACATAGGTGTGGTGGAAATACAGCATTCACATCCATTAAGTCACGCTGGGTCTTTCCATTCATTTCTTGTATAAGAATAATTTTTTAACAGTGGCTTTAAACATATTAAAACCTTTACTTTATTCCTTTGATTAAAGTGGTAAAAACCAACCTCTTCTATAGAAGAACTTCTTGCTGCTCCTTCCAAGAGCATGCATTATCTTAGAAGTACTGTGTTCAGTAGTATTTTAAAATGAATAAATAACAGGAAGCTGGCATTAATTTATTGAACTTAATTCAGAGAATTCTCCTTTTTTTATGGGTTAAATTCTGTGAATGTAGAAAGACTAGTGAAATTTGTCTACCTGGGAAGTTAAAAGAAAATACAGAGAAGTAACTCCAGCTTTGGAAGATGTGAACTCAGCCAATCATCATCATCTAGTTTTCTTATTCTTTAGAGTAAGCTGACTTACTGTAGTGCTGTAAGTCCTGTCACCTATACCAGACTGTGAACAGCGCTTCTTGAGACTGCTGTCGTCTTCCATTTTAGTGCTACTGAATGTTGGTTACTGTCAGTGTACCTCAGTAGAAGATCTTCAAAACTTTTTTCCTGAAAAATGGACTCCAAGTGATCAATTTGACAGTATCATTTTGAAATTTTTTCTTTATTGCAGAAAAGTTGGTTTCTTCAATTATTTATAACACCACAAAGCTTTTATAATATTTTTCTTTTGCTCTGTCTTCCTATAAAGCATTGCAAGCGCTGAAAGGAAGCCAGCTAAGAGCAAGGTTTTCTGAGTTTTGTGCTCTGGTTGTTCTATTTTACGTTGTGTAATTCTTTGATCCTTCTGCCTATGAACTAGTCACATTGTCTTAATAGAAAGAGTTCCACAAATACAATCTATCTTCAAGGATAACAAGTTACACCTAGGGGTGAGTGGGAGGAACTACAAGTATAACAATATTTCAGTAACTAAATTTTTTAGTATTACATTTCCATAATTGCCTTGGAATAACTGGAGATCAAGTATGTAGTGCTGCCAGTAGAATGTTCTGCTTCTTGAATTGCATATGTAGATAAATCACTGACATTCTGAATGTTTCTTTTGATTTCCTTTAAG
Seq C2 exon
GCAGACTATGAATTTATCAGCTCTGGTCTCTACCTTGTGGTGTTGTTACACTTATGTGAGCAGCGCTTTTCTGATATGCTTGGAACCGCAAGTGAGGCCAGCACACGTGTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584:ENSGALT00000020547:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129062=RINGv=PD(21.4=32.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTTCTTTGGAAGCGGTAACT
R:
CTGACACGTGTGCTGGCC
Band lengths:
223-1602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]