GgaINT0050762 @ galGal3
Intron Retention
Gene
ENSGALG00000009589 | Q9YI58_CHICK
Description
NA
Coordinates
chr7:19671684-19672020:-
Coord C1 exon
chr7:19671941-19672020
Coord A exon
chr7:19671739-19671940
Coord C2 exon
chr7:19671684-19671738
Length
202 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TGTTTCTATAATAATTACAGAGG
3' ss Score
3.91
Exon sequences
Seq C1 exon
AGTCACTACTCAATAAAGAAAGCTGGAGCTGCACTTGGATTTGGAACAGACAATGTAATTTTGATAAAGTGCAATGAAAG
Seq A exon
GTAGGATGAATGCTAATGTTTTGATGTATTAAATGTGTTCATCTGTTAAATTTGTTTTAGTATACTTAAGGGCTGGTTCAATACAGTGTGTCGAGTTGCTAATCGCCTGTTGAGAAAATGCTATTAAATTATTTCAACTGTAGCTAGTATTTCTGTACTCAATCTTCAATTTTCTTTGTCTTTGTTTCTATAATAATTACAG
Seq C2 exon
AGGCAAAATAATACCAGCTGATTTAGAAGCAAAAATTTTGGAAGCAAAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009589:ENSGALT00000015628:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(6.9=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]