GgaINT0050769 @ galGal4
Intron Retention
Gene
ENSGALG00000009589 | GAD67
Description
glutamate decarboxylase 1 [Source:RefSeq peptide;Acc:NP_990244]
Coordinates
chr7:17698291-17703732:-
Coord C1 exon
chr7:17703643-17703732
Coord A exon
chr7:17701835-17703642
Coord C2 exon
chr7:17698291-17701834
Length
1808 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGA
5' ss Score
6.84
3' ss Seq
CTCAATTTTAAATTCTAAAGGTG
3' ss Score
4.74
Exon sequences
Seq C1 exon
CCGGAGCACACAAATGTATGCTTTTGGTATATTCCACCAAGTCTCAGAGGCATGCCAGACTGTGATGAGAGACGAGAAAAGCTGCACAGG
Seq A exon
GTATGAGGCTTATGTTAAATGCAAATGTGTAGTCTGCTATTTCAACCCAAAGTATTCTTTTTATTAAAAATAATACATCTCTGTGTTGACAAGTTCCAGATACTAGGGCAAACATTCTCCTGTTTCTTGTTAGGGCTTTGATATTTGTTTACCTTTATCTCTAGCTAGAGCTAAAGTCACGTTTTCCCTGTGGAACAAAATACAGAATACAATCAGGCTTTATTTATTTGTTTCCTTTTCCTTCTGTGGTCCCAGAAGTGTACAAGAGTACTTAAAAAGTAGCTAGATATGGAAGACATCCCCACCTTGTTTGAACAAGGCGGTATTTCAGAAAGAGAAACTGAAGGGTAACTATTTGAAGGTTCTGGGGCAGATACAGCACATGGAAACATGCAAGTCTTTTCTCAGATCTTTATTTTGGTTTTAGGTATTCTTAGTCACAGGTGATTTTCCACTGTTTGATTACTGCATTTCAGTGAAAATGAATATGGTTTGGAAGACTTTGGGGTAGTATTTTTGAAGAAATGGTAGAGGGAAATGAAGGTATTGTAGAGGAACCACCAGAGAATTCTCCATTACTCAGGAACTGAGGGAAGTGAGAAAAAAATGTAGTAGCATTTTAGACAAATAGAAGTGGAATGAAGTAAATTGAGGAGACAACAGAATTATTTTATAGTTGTAAAAAATGAATTGCATTTTTTATGTATAGAAAGGAAGAAAAATGGACAAAGTTGGGAGGTTTTGTGAAGGATTTTTTTGTTTTCATCTCACCCCAGAAAGAAAACAGATATTCCTTGGACAACCTAGTGTTAGGGAGAATGCCTAAAGTGAGAGGGAAAAAAAAAAAAAAAGGAGTTAGATAAGATTGGGAATAAGGATGAAATATTTTATTTGACCTTGTTAATTGTTAAAGGCCATCATAAAGCATCCTACAAAACAGTTACGAACCAGAGCTCTGACCTTGGCTGGCAGACAGTAGAGCAGGAGAAAAGTCTGGATGGCATAACTGGACTCACCTAATACTGCATATTAAGACTGTTGGAACAGTATTTCTTATAAATTAAAGTGAGGAAGTGTAACAGAGGTAAATGCACAGTACTGCAAAACTGCTGGAAGGTTTCCATGGCTTATGCTAGCAGAAAATATTCCTTACAACAAAGATCTTGTTGAAAAATTTCCGCTGTCCCCTGCCTTGTCCCTTTAGCAAGTTGACTTTGAGAATACATATATTTTCATGAAAAGCATCCATGGCCCTCAAAAAGTTGATTCTGGAGTGAGTTTTCAAACAAAAAAAACAACAACAAAAGAAATACTCCCTCGTCCCCAACATTTCCTGACATCAAAATTATGCATATCTCTTTTATCCAAAGGCTGCAGTAGAACTGTGCACATTCAGTACTTCTCACTCAAATACTCAGGATATAAGAATAACGATAATTAATCAGCACATACAAATTATGTACATTAGATATATTAAAATGTTATGTTCTGAATATACTAGGATGCTGCTAGTTTCTCAATTAAAAAGATTTCTTAAAAGATCAATATTACCATTGCCAATTTTACTTCAGATATCCAATCTCTGAAGCTTTCCAGCTTTTTCTCTTACAGATCTTATACTGCTTTTCTAAACTGTCCATTTCATTCCTTTTTGTTTTCCCTAAATTTAGACAGCTTGTGATATTCAAAGAAAAAATAAAAATTCTCAAAATCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCCCTCTCTCTCTTTGTGTCCCTCCTTCTCTCCCTCAATTTTAAATTCTAAAG
Seq C2 exon
GTGGCACCGAAAATCAAAGCCCTGATGATGGAGTCAGGTACTACCATGGTTGGATATCAGCCTCAGGGCGATAAAGTCAACTTCTTCCGAATGGTCATCTCAAACCCAGCAGCAACTAAGTCTGACATAGACTTCCTCATTGAGGAAATAGAGAGATTGGGGCAGGAGCTGTAGTACAATGGTTGAGTTATTCATTTCTCTAATTCACTGTTTTCCAGTACTGGTTATTTTTTTAACCCAGTTCTGCAGAACATGTTTTAAGGAAATTCTCTTTCTGTAAGTTCCAATCTCCTAAGACATCCTTAAGCAGTGACAAAACTCATAGGCTATTGAAATATATGTGTACTGGTAGATCATTTTACTGAGGGAAAATGTATTATCTTGAAGTTGAAGTACTGTTGACTCTTAGATTGGTCTTGTTTATTGTCAGCAGGAAATTAGTAAGTGTGAAAATAGAAAATTAAGAACTCTGCACAGTATATATGTACAGTATAAATATATATCTATAATTATATATATATACATATATATATATATATAAATATATAAAGAGGTTATGAACTTAGATCTAAGCCACAGCATGTTTTCCACTTTAAGAAAATTAACTTTTCCTTCAACAACTGATGTGGATAATGTGCTACAGATTTTCCTGCCAGGTAAAAATAGACATATAGAAACATTTCTAAAATGTAGATTCTTAGGAGCTAAAGAAAATGTATAACAGTATTGAATCTTGTTGTTGGTGCTTCTGTCACATACGAAACAGCAATCTCTAACAGCACCTTCGAGTAAAATAGTTGTATTTTCCCTTTAGTGTCACATCGGGGATAATAGTAGCAGAGTCATTGTAACAGGTATATTATTGCTGTATTTTTAGAGGTTAATTTGTGTAGATTGTGTATATTATTGTTAAATGACTTTGTGTAAAAGGATTTAAATGTAATAGTTTTACAGCAAGGTAATTGTTGAATTGTAGGTATACAAAATATTTGCTTATTTATATGCAGAGATTTACCATGCTGAAGAGTTGTCTTGTATTTTCTTCCATTTGTAATGTATCCTATTTATATATTATTGAAGTTCTAAATAATGTTTATGGTATTTTAGTGTATTTGTGAGCCAAAGAAAAGATACAAAAATACTAGCTAACACTTTCATTTAAATCCTAGTGCCCTTAAAATAATAATTTACAGATAATTTTACTGATTATAAGGAGTTCTAACATTGTACATAGGCTGTCAAATAATGAAATCCCCTTTATCTATTAGAAATTTCAGTTTATTAAATGTAATGTCTGACTGTCTGTTCAGTGTTCTGAATGCTTTTCTAGTGAATATAGGTTGCTAACCAAGGCCCCTGTTTTTGAGTTGAATGTCAGGACTAATCTCTATGACCATTTTAACTAAATTCTGTGGGAAGATTCCTGAAGGTCTGAAGAATTTATGTGGGAGTCTAAATGAGCATCATTCTTTCAGTGAAATTAGATGCATTGTATGTTTGGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAACAAAAATTCACCATCACCAAAAATTCAGAATCTTTTAATACAGCTGACATGTCACAGCAATTTAAACCAGCCAGACTTTGCAAAGTATAGACACCAGAGTCATCTGCAGCTTGTTCAGTTTTAATCATTGTATAATCAATACTAAAAAGTGGAAAACTCCATAGTGAAAGCAGAATAGTGGAACAAAATGAAAATTCAATAGTTCTCTGTCTACAGAATTACTGTCACTGTGATAAATGGAATATGCTGATTTTAAACCTCTTCATATATGACTCTAGGTCTATTATCCACGCAAGTCAATAATTAGCTGGGTTTCCTTTTTTTCTTTATCCTCCAAATCAGTAATAAAATTATTTTATAAATGTTCAGTGAACGCACACTATGCTGTCCTTACATCCTCTTTACCTCCCTTTGTTACTGTGGAAGGACAGACAGCTACAGATACCAGACACTTCCATCCTGCAGGTCTGATGGGTTGTCTTCTGAGGATGCTGTCTCACACTTTCAGCAGGGTCAGAACAGACAGAAGGAAGAATCTATAAAATGGTAAATGGTGTATCGTGCAGCACAGCCTTTCCAGATTTTCATAGGAGTATTGTTCATCCCCCTTTGCACAGCACAGTATTTCTTATATTAGATTACTTTCGTCAATACAGTGCAGTTGGTATCTTACTTTCTTCATCTTAAGCACTAACCTTCTTTAATTATATCGCTGATATCTTGCTATGTTCTCACTAGTTAACATTTTTCACGTAAACATCCGCACTGAGGCCTGAGGCCTACCATGCAGAAGCAGTCAGTGTGAATACTGACTTCAGTAACAACTTCCATAACATTAATTGCCATTCTTTATAAGCTGTTCAGCAGAACCATATGGTCTGTCACTGGGAACTGTTTTTAGGAGTAGAAAGAAGTGTGCTTTGAAGGGAAAGAGCTTTTCGCATTTCAGCTGAAAGGCTTCTGTCTGAGATCTGGTCTCTCTCACAACTTCTCACTTTATTTGAAGTCCAGCCACAGAATGTTGAAGGATTTCCCTCAGTCCTTGTGATTTATGAGAAACAATATGAACTAGGATAGTCAGTGCAAAGATAGTTAACTACTGACATTACTTTGCTCCCTTGTCAAATTAACTCACCACTGAAGTTGTAAGATCCAGCTTATCCTTAATCCTCTAACATTAACATTTTAACCTCATGGATCTGGTATCCAGTTCATCATCTCAATATTGTAGTAACTGTATTTGCAATTTTATATTCCTTAGAAGCATATAAACGAAAGAGAATCACCTGATATAGCTGACTGTGAAACCACAGGACAGACTGCAGTATGGTTTACTGGCATTCATACAGCAAGCTTTGGGCAGCCCTGTGATGTAGTCAGAAATAGAACTAGATCTCCTCAGCACATATTCTGTGTTTTGCTCGCTAAAATTTCTGCTGCTTCATTTAGTGAAGCATCTTGCTTTCTGCAGGTAAGGAGCATCAGAGGTTGTAGCTGTTGCCACTGATGATTTGTATCCAGGAGGAAGCGGAGCTCCTCCAGCTTGCCTCAGAAATGAGTCAGTTAACACAGAGGTGTTTTCTCTAGAGACAGGTGCTTTAAATCCATCTTTCAACACTCTGAACTTTATCTTGCCTATCTGCAGTGTTGTGTCTTGTCACAGGTGATACCCACAGTTATATTTTTTTCTTGTGAAGCTTTTAATTGTAATATCAGGCACAGGGCACGTAATATTTTCCAATGTGGTTAGCTGATTTTGACTAGGAGTTGGAACTTTAAGGTTGCTTCCAACCCAAGCCATTCTACAATTCTATGATTCATCAGTAAGAAAACTCATCTGTGTTCTCTTCTCAGTAGGTAATCTCCATGTGAGTAATATCTTGCAGCTTCTCAAACAAAAGGTTACCTGGGACGTTCCTGTTTTTATAATCCATACACTATTGACTGTGAGAGTTCAGGGGGTATGGATACACAGAAATATTGACTAATACAAAGCATTACTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009589:ENSGALT00000043162:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=PD(2.7=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGAGAAAAGCTGCACAGG
R:
AGCCTATGAGTTTTGTCACTGCT
Band lengths:
349-2157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]