GgaINT0050858 @ galGal3
Intron Retention
Gene
ENSGALG00000011149 | PLA2R1
Description
NA
Coordinates
chr7:23439154-23439730:+
Coord C1 exon
chr7:23439154-23439286
Coord A exon
chr7:23439287-23439694
Coord C2 exon
chr7:23439695-23439730
Length
408 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
TAGTATCTTTATTTTTGCAGGTG
3' ss Score
8.37
Exon sequences
Seq C1 exon
GTTGTAGCTTCATTTCTGGAGAGCAAGTATGTTGAAGATGACTCAAGAAACTGTGGTGTATTCAAAGTAAATAGAACAATTTTTCCAGCACACTGCAATGAAAAGCGTGAATGGATATGCAAAATACCAAAAG
Seq A exon
GTGAAACCTTAATTAACTCGCATTGCTCTAACTTGTAGTTCAGAAGGGACAAGAAAAAATATCTGAAAGACTGCCAATGGTTTTCTGTGTGAAATCATGGCAAAGTTACATGCTTCTGTTGGGATTTATTAGCCATATACCAAAACTGGTCTATGTGGACAGGTGGTGGTGGGCAGCAACGATTAGCAACAAATTAGAAGGTAACCTAAGTTCTGATTTATAAAAGTTGTTAAAAATATTATTTAGTAAGCATGGCCATTTTTATTTTATTGCATGTTTAGCTTTTTTTGTCTCTGGATGAAAATAGCAAATTCTTAATGATTTTGATCAAATTCTCAACATGCCAGGAAAGCAATTTCAGAGCAATATCTCTTCTCAATTCTTAATCTAGTATCTTTATTTTTGCAG
Seq C2 exon
GTGTTAAACCAAAAAATCCAGATTGGTACATAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149:ENSGALT00000033111:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(36.9=73.2)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]