GgaINT0051014 @ galGal3
Intron Retention
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6936174-6936605:-
Coord C1 exon
chr7:6936514-6936605
Coord A exon
chr7:6936285-6936513
Coord C2 exon
chr7:6936174-6936284
Length
229 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
ATTCTAATGTATTTTTGTAGGTA
3' ss Score
8.03
Exon sequences
Seq C1 exon
GCAAACTGTGGAGTCGGAGCTTGAAGTTAGCATATACCCTGCTAAACAAGCTAACCAGTAGGAATGAACCACTGCTAAAGCCTGGAGACCGG
Seq A exon
GTAGGTTTGTTTGGGGTCATCTGTATGGATAAAATAGAGAGCGAGGAGCACCTCCAGCTTTGTAATACTGTGATTTGTAATATTATATATAATCACAACTCGCACTGTTTATTTTCCTATTTTGTGAACCTGGATAGTGCTGTGACATTTTTGTCCCACCAATTTAAAAAAACGTGCCACCCAAATGACAACAAAAAGCATTTCATGTTATTCTAATGTATTTTTGTAG
Seq C2 exon
GTAGCTCTTGTATTTCCTAATAGTGATCCAGTTATGTTTATGGTGGCGTTCTATGGATGTCTCCTGGCAGAACTTATCCCTGTGCCAATAGAAGTTCCACTAACAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228:ENSGALT00000010067:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACTGTGGAGTCGGAGCTT
R:
TGTTAGTGGAACTTCTATTGGCACA
Band lengths:
196-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]