GgaINT0051015 @ galGal3
Intron Retention
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6935303-6936284:-
Coord C1 exon
chr7:6936174-6936284
Coord A exon
chr7:6935427-6936173
Coord C2 exon
chr7:6935303-6935426
Length
747 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
ATCATATGGTTTCTCTGTAGGAT
3' ss Score
10.09
Exon sequences
Seq C1 exon
GTAGCTCTTGTATTTCCTAATAGTGATCCAGTTATGTTTATGGTGGCGTTCTATGGATGTCTCCTGGCAGAACTTATCCCTGTGCCAATAGAAGTTCCACTAACAAGAAAG
Seq A exon
GTAGGCAAATGCATCCAAAAAATTCATAGCTTCATAAATGAATTGGAGGAGGATGGGCAGTGACTGGATCTTACATAGGATCCCCCCAGGCCTGCACTTTTGAAAGCAGTACAGTGCATCAGCTGAACAACTTGCTCTGCTCCTCAGTGGCTGGTAGACTGAAGTGCATGTTCTAAGTTTGGAAAATATTTCATATTTAGAGATGAGACAAAATTTTGTGAACCTAATAATTCTATTTTAGGATGCGTACTTATAGAAATTGTTTTAATGTGTTCTTTTGGAAAAGGTCTGCAATTTTTTGCTCAAAATATAACACAGAAATATGAAATATGAAAAATGAAATATTTTCAGCTCTCAGGCTGAATAGTGGGAATAGAGGAAGGTAGAACAGTTCTGAGAAGCTGCAGGCTCTTGCTCTTTGGTGCCTCAAGACTCAGAAACAACATCAAACTGGCTCTGTGTCTTACTGAAACGTACGAACTTTCTACAGGGTTGGAGAATTGTGTACAACTATTGTTTTTGTTGCTACTTTTCTTCCATTGCTTACCAGACTACTCCCTAATCTGACATAGTTCACCCTAAGCAAAACTGCATTTTGAGTATAGATTTCAGAGCTATCATGAAAGGTCTTTGGACCTTGCTTTTTCCCTGTGATATAAATTGGCTTAATATTTTCAAAGCATGGAAAACTAGCTGTAAACTGTGCCTGATTATTTGTGAGTTTGCTATCATATGGTTTCTCTGTAG
Seq C2 exon
GATGCTGGCAGCCAACAAATTGGCTTTCTTTTGGGCAGCTGTGGAGTAACGCTAGCTTTAACCACTGATGCTTGTCAGAAAGGCCTTCCTAAAGCTCAAACGGGTGAGGTGGTTACCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228:ENSGALT00000010067:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTGTATTTCCTAATAGTGATCC
R:
GGTAACCACCTCACCCGTTTG
Band lengths:
225-972
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]