GgaINT0051525 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NZY2]
Coordinates
chr5:14266554-14267800:-
Coord C1 exon
chr5:14267548-14267800
Coord A exon
chr5:14266607-14267547
Coord C2 exon
chr5:14266554-14266606
Length
941 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
ATTTTATGGAATCTCTTTAGCAA
3' ss Score
4.93
Exon sequences
Seq C1 exon
ATCCCTCAGAGGAGTGTCCTGAGACTATGGTTTATAACTATAGCGTGAAGTACTGCAACCAGTCTTGCCGATCGCTGGATGAACCTGATCCGCTGTGTAAAGTTCAGATTGCTCCTATGGAGGGCTGCGGTTGCCCCGAAGGGACCTACCTCAATGACGAGGAGGAATGTGTGACTCCAGATGACTGTCCCTGCTACTACAAAGGCAAGATTGTTCAGCCTGGCAACTCTTTCCAAGAAGACAAACTGTTGTG
Seq A exon
GTAAGCTGCACTAATGATGCAAAGGTTGAATACCTGGGCTTGCTGGGGAAGTCCCTGCTCTAATCCTTGAATGTGGTAATTTTGCTCTAAGGAATCATGATTAATGTCTGCTTGATTTTACCAAAGCAAATGTTCCCCTGGCAGGAAGGGCAGCCACAGTGAAGATTAAGATCCTATATTCCTGCTAGCAAACAAGAACCTTAAAACATGTAGTGTTTGTGACCTATCTCTATGCAAAGTTCACTGTTGTGTAAAATATTCGCTTACAGCAGGAGCAAGATAGGGGCTTTGAGAGGGAAGTTTCTGGTTTGTGATGAAAAGGAGTCAAAAACATCCCCCTACACACCATCCTGCAGGCTGTTAAAAAAAAATATTGCCCAAGGAAAAAAAAACAAAATCTCAGTTTTTAAACATAAGGGGAAAACTGGGGGAGTGAATAATAAAAGTAAGGTAATTCTCTTGCATCTCCAGTGCAAAACAACTGCCTTCTCCTCATTTTCAGCCAGCTCAGGGTAGCAGATAAATGCAAGCAAATATCAGGCTGAATTATGCAAACAATGTATTTTTATCTTTAGATGTCTGTTTTCTCTCTCTCTCTTCCAACTCTTGGATTTTTCTCTGAAAATTTTTGTCTGCTTTGTAGATACAAATTCACTTAGTAATTTAGGAGGCTTCTTAATTAAGAAGGTATTACTCCCATTTCACAGACTGGAAGAGAAATGCTGAGGAAAGACTTGATTCAGAATTTAGAATGAAAGAAAAGAATTTCATCTTTAGGTCTTATCTTCCTTCTGGGGATGGCAAATCACATCTGTACCAAATATTAATTTTGATGGGAATTTGTTATTTGTGTTACTAGCAAAGCTTTGCAGAGGCTTTCTCTCTAGTGAGAGAGACAAGTGTGAAGAGCTGATGTGTTTCATTTTATGGAATCTCTTTAG
Seq C2 exon
CAAATGCATTCAAGGAAGATTAGACTGCATTGGAGAAACTGTCCTGGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717:ENSGALT00000010866:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=68.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTCAGAGGAGTGTCC
R:
TACCAGGACAGTTTCTCCAATGC
Band lengths:
302-1243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]