GgaINT0051553 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NZY2]
Coordinates
chr5:14245611-14246560:-
Coord C1 exon
chr5:14246432-14246560
Coord A exon
chr5:14245651-14246431
Coord C2 exon
chr5:14245611-14245650
Length
781 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CTGGTTTGCTTTCAATACAGGGG
3' ss Score
6.39
Exon sequences
Seq C1 exon
GTTGGAAAGAGTTATAAAGCACCATACGATAACTGTACTCAGTACACATGCACTGAATCTGGGGGCCAGTTCTCCTTGACTAGTACAGTAAAGGTCTGCCTACCATTTGAGGAGTCAAACTGTGTCCCA
Seq A exon
GTAAGTATTTTAGAATTAGAAAAAAGCGTCCTGAAATGAGCCATGTCATTGCTCTGGGAGATTTCTTTACTCTTCTGAATGGGTCACTTCACTTTTTCTTGACCTTTCCGAGTCGATCATCCTATCTGAAGGAAATGTGCTTTTTTCAACTCTGAATGGACTGTCCCAGGAAGCTTAACAAAAGTATCTGTGAGCCGTGCACACGCTTCTTGTGAAGTAAAGCACTAGAACTTGAAAGAGGAGAGTCATGGGGCAATGACAAAGCAGGATTTTTCATCAGCTAGGAAACACCAGAGTTTACAAAATGAAAGTGAACAAATGATAACTTACCATGGAGCCTTGGGGGAACACTGTCTTCTGCTGTGTGTTGCATTGCTAAGCAAAGAAATAGTAGATGAATGAGTAACAGGGATCATTCGTGATGTGGCCTTTGTGTCAGTCAGGCTGTTCCATTTCAGGGGCAGGTGTCATTCTTTGGCTTCAAATTTGCCTCTTTTGTGCTGGCTTCAACAGAACCTAGGTAAGGTCAGGCACGTGTTATGGAACATCCCATGTGGCTTGTGAGTAGATTTAAAGAAAAGTTTCTCCCTGATGGATTTTTTTTTTAAAGCTGTTCTGCATAAAACTGGTACACAATACACAAATGGGTCTGATGAGGAGTTGGTTTGTTGGTTACAGATGAGGGCATGTTTTTGAACTCCCCTTGTTTCTACGAGCTGCTTAACCGTATGTGCAAGCTAGACTTGAGTATCTGAACTTCTCTGGTTTGCTTTCAATACAG
Seq C2 exon
GGGACTGTTGATGTGACTTCAGATGGCTGTTGTAAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717:ENSGALT00000010866:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]