GgaINT0051928 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NDV6]
Coordinates
chr5:15416435-15417308:-
Coord C1 exon
chr5:15417260-15417308
Coord A exon
chr5:15416556-15417259
Coord C2 exon
chr5:15416435-15416555
Length
704 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GTGCCCCTTGGCTCTTGCAGGAG
3' ss Score
9.31
Exon sequences
Seq C1 exon
GCAACAGGCACTGTTCCACGTCCTGTCGGCATACTCAGTTTACAACACT
Seq A exon
GTAAGTAGTAAGCTAGTCCAGTTACAGTGAAAGCCCTGTGCTGATACATGAATATAAATCCAGCAGGTGTGTGTATCTCAGGCAGAGTCATGCCAGCTGAAGTTCTAATGCTGGTGTGCATGGGCTGCTGTGATGCTTGGACAGAATAGACCTAAATTGGTTGCTGAGTGCGCTACCTCCATTGCAGGAGGCACAGGTGACTTTAGGTGGCAGTCAAAGAAATGACTGCTCGCTGACCTGCCTCGCAGCTCTGGCATCCTTAAAATCTTGGGTGAACCTTTTGAAGGTGCTGTTCAGTAGATAACACAAATTCAAAGGGCTTTCTAAAGCCCTGGCTCAGAGCTGGACTCTTGTTTTTGTGTAGGAAAAAGAGGGAGAATGGTTTGTGTGTTGGTTTTAATCATCGTGTGGAGGTGCCTGGAGGTGTTGTGTAGACCATATGGCAGACACTGTAGGCATATGGGAACTGTAAACTGGAGAATAAACAATAAATACCTGGAAACTGGGACAGAACTTAGAGGAGGATGGGAGACACAGGCAAGCTGGGCTTCTTGTGACATCAGAGGGGCCCGGGATCCATGTGCTCCCATCTCCAGGTCTTCCCCATGTGCCCCTTTTCACCAGTAACAGATCGTGAGAGTCTGATAGGGTTGCAGAGAGAGCCACAGGCAGCATGCAGCACGTGTGCCCCTTGGCTCTTGCAG
Seq C2 exon
GAGGTGAGCTACTGCCAGGGGATGAGTCAGATCGCAGCCATCCTGCTGATGTACTTGAACGAAGAAGATGCGTTTTGGGCACTGGCACAGCTGCTGACCAACCAGAAGCACGCAATGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006897:ENSGALT00000020386:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(7.6=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]