GgaINT0051929 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:17184352-17185373:-
Coord C1 exon
chr5:17185253-17185373
Coord A exon
chr5:17184447-17185252
Coord C2 exon
chr5:17184352-17184446
Length
806 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TCTTGTCTTTTCTCGCTTAGGTT
3' ss Score
10.2
Exon sequences
Seq C1 exon
GAGGTGAGCTACTGCCAGGGGATGAGTCAGATCGCAGCCATCCTGCTGATGTACTTGAACGAAGAAGATGCGTTTTGGGCACTGGCACAGCTGCTGACCAACCAGAAGCACGCAATGCATG
Seq A exon
GTAAGGATGGCTGGGATGTGGGCAGCAGCTCTTGCTGTGTGGGGCGTGCTGAGAGGAGGCTGTAGGCTGCTGTGTAATTTGGCCAGGAGAGCCTTGTTTCTCCTTAAAGTGTGCATGGCTTAATTACATGGCAGCATAAACTGAGCATGGAGCTGAGCTCTGCTTCAGGCAGACAGGCTCAAGAGAAGAATGTAGTTTATCAGCACCAGCCTCTAATGCTGTATAATTAACGCAGTTATATAGGTGATATCTCCCCTCCAAAGTGCTTTGCCCCTGGCAGTCGATTAACTCAAGCTTACAGGTTTTTAAGAAGACTAGCAGAAGTGCATCCAAGAGCACTGCAAGACACTTTGGTTTTAATATGCCATGAGCTACGTGCCCTTAAGTTTCTATGAAGATGCAATTCCACTGAATGGGCTGTATTATTTTGGTTCAACCACATTAAAGTTCCTTTCATCTTGTGGTTAGCAGTCATTTGTCCACAGAGGGCAATTTCAGAAGCAGGCGGCCAGCCCTGGTGGCCTCACAACTGTGGATGGCTCTGTGAAGAAGCCTACACCCAGCCTGGTCTTGCTTTGATGCTCTCTGCTAAAGCAGTGCTTTATCTGTGATTCTGTGGTTTTGGGATGCAAAGCAGAAAGAAGCTTGTTATAGGCTTGCCAAGCACATCTCCTTCCAGATAGCAGGTTTGTGCTGTATCCATGCTGGCACAGATGCACAGGGAATGAATGTCTACGACATGGGGCTGCCCCATGACCACTCCCCCCAGCTCCTTTAACTTTTTCCTCTTGTCTTTTCTCGCTTAG
Seq C2 exon
GTTTCTTTATTCCTGGGTTCCCAAAGCTGCAGAGATTTCAAGCTCACCACGAGCAGATTTTAAGCAAACTCTTTCCGAAACTGAAGAAGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006897:ENSGALT00000011170:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(19.2=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGAGCTACTGCCAGGG
R:
CATGTGCTTCTTCAGTTTCGGA
Band lengths:
216-1022
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]