GgaINT0054787 @ galGal3
Intron Retention
Gene
ENSGALG00000011389 | TRAF3
Description
NA
Coordinates
chr5:52338646-52343894:+
Coord C1 exon
chr5:52338646-52338747
Coord A exon
chr5:52338748-52343751
Coord C2 exon
chr5:52343752-52343894
Length
5004 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTCAACTTTTCTTTCCTTAGGGT
3' ss Score
11.52
Exon sequences
Seq C1 exon
CAGCTCTCAGCAGCAGGAGACAATATATTAATCCATTGGAAGTACACACTGCAGTTTCGTGTATCACTGTGTTTATGCTGTGAATTTTTTTCATGTAAACAG
Seq A exon
GTAGGTTGTGATTTTTATTTTTATTTTTTGCTATACACGTTTTTGTAATTTTAGAAGTCTTGTTTCGGTTGTGTGAGGGTTGTTTTCTTGTTTTGTTTTGGTTTGGTTTTGTTTTGAGGGGGTGGGGGGTAGTGGTAGAATTCCTGTAATTGTGTGAAACCGTAAAGTACCTTATTCTCCTTTATGTTTTCACATCTCAAAGTTGATGGTATTAATTTTACAAATCACCTTCAGTGCTTGAACTTGCTTTCGGGTGTGATACCTCAAATCTCAAGCAAATTTCTCTCGTTTCTGTAAGCCAGCCCTCTTGTAGCACTGCTCTTCTTTTGTCTTCCACACAATTCGAGTGGACTATTTAGCAAGTTCTCCTGTACTGTCTGCCTGGTGGAATTATGATGCCTGATAGTATGTGGAGGTTTCTTTGTTAATAAATTTTTGGTACATTTTATCAATGTTATTCTATTTGCAACCAAGGTAAGCGTTATTATCTCTATTTCACTGAACACCAGTGGGAGAATTGTTCTTTTGGAAATAGCTTAGAAATATGATAAATGTTAAACTACTTCCTTAGTCAAGAGGAAGAAATATTTTAGAATGGTACATTAAATATTTTTGAGGTTCTCCTTTCCTTCCTTGTTGCACCTTGCTTTTTTCTGGAGTTTGGAAAGAAAAGGTAGTCCTACAGAAAGCTGGCAGTCCTGTTTGCCTTTGGTTTTAACTGTAAAATAAGTTTGGACAAGAAAAAGTGAAACAGATGCTCCTTTTCAATTCTTGACAAAAGCACAGAGTATTTCTGAGTTCTCTGGGTGAGCAGTAGGGGTCGTGTCCTCAGAGAGCAGCAGCAGATGATACTCTGAGACTACAGAACATGAGATTCTGTGTCCTGTTCCTCAGAGCAGGTACAGCTTTATAAAGCTGAAAGCTAGAGAAGTTGTACTCCTTTTCCATACAAAATTTTGAAACATCTGAAGATTTATTTTTATTTTTTTTTACTACAGTTCTTTTAAACATTATGACATAGAACATTCCAAATACCAAAAACTCTGGGAATCCTGAACGATTGGTCAATCAGACTTGCTGCTTTTCTGTAAGAATTTCTTCCTTGGCCCTAGTTTGTAATGTAGTGGTAGGTGGTGGTTTTTTTTTTTTCTCCTAAGAAGTGCTGTGTGTATCCTTGATAGTGTGTGAATCCCAACCAGGAGGCAATTGGACGTTCAGCGTCCTGAAGCAATATAAGTTAAGAAGTGTTGTTAAGATGCTACTTTTAGACTAAATGCAAAAACTGAAAGATCTTATTTTACAATTTGTTCTCTTTTTAGGGGATATTTCTGGTCCTCCTTTCCCCCAGCTTTACTAAGATTTTCTTGTTGATGTTCCTTAATTTTAGTTATTTTTTTTCACATTTGGCAATTCCCAACTTCAGATTGAAGCTGTATTATACAAAGTAGTACGCATGCAAGTATACGAAGAGATGGGAACTTGATAGGGTATCTAGTTCATGAGGGTGAAAGGAGGCATTATGCCTTCTTCCTCAGTGAAGGAGAACAGAAAAGTACAGAAGTGCTCTAAGTCATGTAGAAGGTACTTGTTAGTTCCTCTGATATTTTAATTTTTTACCCCTATTTCAAAGCCACCAGGCTTTTTCCCTTTCCAAATCTGTTGTTCTATATTTTTAGTGTAGTACTTAATGTTTAGTGTACAAACCAGGGAAGAGGCTCTAAACTGAAGATGACCTTTGGCATTGAATAAATTCTTAATAATAGCTGCAAGCTTAAGTAACTAAAACTCTGAATGGGACCTATGCCATGCTAGAGAAGAAAGAATACAAAACAAAACAATCCAAGTTGTAAGACTGCTATTTCAGTGCCTGGAAACTTAGAAGCCCCTGTGAAGAATAAGCAAAGGACTTGTGTGTGGCTGTGAGAAAGCAATCTTTCTCCTGTCTGTGGATGGTGGGGAGTGGGTAGTAGTTGTGTTAATTATATCTGTGAAGCTGTATCTATGTTGCCTGTTACCTTTTCTTTAAAAGGTCAGTGTAAGCCCAGTTGAAGCATGCCACTAAAAACAAGCAATTTTTTTTCACTATTGGGAGTCGGAAGCCAAAAGGATTCATGCGCATGAAATTTCTTTCCAGCATTCTTCCTGCTTTTCTCCAAATAACGTGTTCTGAATACTGGCTCTTGCACATTCTCCTGGGGCTGCAGCAGGAGGTCTGGAAGTGAGGTACAGGGTGCTGAAGGTTGCTGTTCAGAAAAAAAAAATAAATCAAAAAAATAAAATTAAACTCTTGTATGAATGAAAAATAGATAAAGAGAGAGGCTGGAGTATGAAGGGAAGAACAGTAGAGAAAATCCTTGAGATCTCACCAAACTGCTGTTTATTCTCTTAAACCCACATCTGATGTGGCAGGAGATGATTGAAATAAACTAAATGGTAACTTTTGGCTTCTTTTCTGGGCTCCTTCAGTCCTCCCCTGCTTGCATTTTGTGTAGCCATCGGAAAGACTGCAGTGCAGTAATTGGCAAGGATTACTAGGAGGGAAAATCAGGCTGTGATGACTCCTTTTACTGAGTCCTGCATTTGGTAGCAGAATGTAATGAATGGATGCCTTTCAGTTCCTGATTCAGAGATGTGGCTGCTTGCAGAAAAGGGGATGGTTCAGTCTTCATTGAGTGTCCCTCGTGTCTGCATGTCATGTCAGAAAGCCAGTAGGTTTAGTGATGCAGTGGTTAGTTTGTTCTTTGATATGAAATACTTGCAGTTTCTGCCTAATACTTTGTATTTAATCCTTTGTGCTCAGACAGTGGAGAGTAAGGTAAGATACTTTTGTTGCCTGACATTTAAAGGATAATGGAAGTAATTTGTGCATGATGTAGCATGCAACAATAACTGTATTCTGTTGGAGAGTAGAAATTTTGATTATCTTTTTAATTGCTTGCAACACATGGAAATTCATTGTAATGAAGTCTGTGGATCATCTAGTTTACTCAAGTTGACAAATGGTTTTTGTACTTCATATGAGTTAAAAGATTATTTTTTATTTTGTCAGTTCTAACTGATTTTCCAGTATAACAATAGAAATTTCTTTTCAAGAACAGTGTTCTTGGAATGTTTGTTCTTTTACATTTATCATAAGAGCTGAAAACCAATCCTTTCTCTGTCTTATTCCTGTCTTGGGATGTTTTTTGATGCCAGAGATTTAAGGATATAGCACCATCATAATGCTGCAACTTACGTGTGGAGCATTTGTGCTGAACTCATTCAGTAAGAATGAAAATGTGGAGGCCCATAAATACTTTGTGAATTGGAAGGAGTTGTGTGTAGGCAGAGAGCTCAAAACTCCCTACACTAAATTAAGATTTGTAGCTGGGCACGTACATGGCACAGTGACGAGGATAGCATAATCCATGTCTAAATTCTGGATAGGAGTGTGAAGAGCTTTGGAACTTGTAACTTGCTGAGTTGTTATATTGAAATTTAGTATTGGAATTTGTGACATCTACTAGCAATATGGGCTCATTGGGAGTTAATACACTATTTTAGTGGGGAAAGTATTGTACAGATGCAGATCTCCTTTACTTATGAGTAAGTTTGTTTCTGTACATCTTAGTGCTGGGCTGTTTTTCCAGTTCTCTTTCTAGAATTAGACAGATTGGGCTTTCATTGGTCAGTGTGTTTTTTTGTTTTTTTTTTCTAGAGTCTGCAGCCACTCATTACCCTTAGTTAGTAGGATTGTGGTCTGCACTATTAGAAGCGTAGCCCTGCCTTTTTACCTCCTTAGGGAGAAAGGTGAACTGGAACATGTGATAAAGATCAAAAAGGACCTATTTAATAGCTCTGAAAATCTGTGGCATTTCTAAATAAATGCTATCGTCTTGGTCTCACGTTACAAAGTTAGTTACTTTAGACATGATTAGGAGAATGAAAGCCTCACACATTCAGTGGCAGATCTGTAATTCTGTGACTGTCTTCATTTCCATAAACAGTTCTGTGTAACTGCTGAGGTTGATCCATCTTTGCAGCATTTTGTGCAGGATGACAGCTGGGAGTACCCTGCCAAGCTGGGCCCTTGGTGCCAGTCTGCTTAGTGTCATCGGGGAGCATCGTTGAGCTGGCACTATGGAATAGCTGGTCACGTTTTTCAGACTTTTCTGACACTGTTAGGCTCTGTGGTAGGTGGCCGCAAACTTCATTGACAAGAGCTGAGAAACTAAAAGTATTGCAAAAGTGTGGTTTTACTGTGTGTGTTGTATATGGTCAAATGAGTTTTGTACAACATGGTCGCAAAGTGTTATTCTTGAAGTGTAAATATGAGAACTCTGTGGGGATTTAGAGTTGGTGTATTGGTTGCCTGAGTGGCGGTGTGGCATTTGTTGTATTTAAACTTGACTGTCACCTTTTCAAAACGTACGTAGATAGAGATCGATGGAGTCTTCCCTTAATGATGCATTCAGGCTCTTCCTCCTCTTCTCTGTGCCTGTTAAAATGTTAAGTTTAAGAAAGTTTCCCCAGCATATGTTACTTTCTTCTAACCGTGTATTTGAATATTGTCTTAGGGTGAGTGCTTTTTGAAGAAACCCTGCAGAACACTTGGTTACTTTTCCAGAATTGGAGTAATGTTTCCAAATAGAATTCAACAGACTGTTAAGAAAAAGGTTGTGCTGCCCTGTAGAGTTCTTTACAGTCTGTGATGGCAACTAATGCATCTGAGTGGAGAAGTTTTGTATGAAGGCAGAAAAAATTGACCATAACTTTCACTTTGTGTAGGTCCAGCTATATATTGTTGTTTCATTGAAAAGTACTCTGTGAGCGATAGTGGAGAGGAAGACAGCAGTTTAAAAATCATGTGTTTGTATGTTACCTATACTGTTCTACACTATTTTAAAATTTTCCATTAAAAGTTAGTTTGATACCCAGTTTCATTAGGCTAACTTTATCGATGCTGAAAAACGTGTACATGGTTTTTGAATGAAGGTGACATAACTTCAACTTTTCTTTCCTTAG
Seq C2 exon
GGTGAAGAAAGAAACCGGGCAGACTAGCAAAGTTCTTTTTGTCAAGAGTAAAGAGAACCCTTACAGAACATTGAGAAAGTGCTTTTTTTCTCCTCTCTTCTCAAGCTACAGATCAAATGAGATTCAAATAAAACGAAGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011389:ENSGALT00000018576:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]