GgaINT0057258 @ galGal4
Intron Retention
Gene
ENSGALG00000020492 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7517]
Coordinates
chr5:14426016-14426251:+
Coord C1 exon
chr5:14426016-14426033
Coord A exon
chr5:14426034-14426163
Coord C2 exon
chr5:14426164-14426251
Length
130 bp
Sequences
Splice sites
5' ss Seq
CAAGTCAAT
5' ss Score
-5.69
3' ss Seq
TTCCTTTGATTTTATTTTAGGTT
3' ss Score
10.47
Exon sequences
Seq C1 exon
AACTCTTCATCCAGTCAA
Seq A exon
GTCAATGATATTAATAAGAGGGATTTCCTTTAACTGGATTCTTGAGCTGAATTTGTTTGATAAAGTAGTACTGTGTAGATCATTTTAATTAGGGTGATTCTTTTATATGTTTCCTTTGATTTTATTTTAG
Seq C2 exon
GTTTTGACTGAAAAAAAATACATGGGGAAGACTTGTGGAATGTGTGGAAATTATGATGGCTATGAACTAAATGACTTTGTGAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020492:ENSGALT00000032694:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(2.6=100)
A:
NA
C2:
PF0009420=VWD=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]