GgaINT0058984 @ galGal3
Intron Retention
Gene
ENSGALG00000010258 | LTBP2
Description
NA
Coordinates
chr5:40355036-40355655:-
Coord C1 exon
chr5:40355533-40355655
Coord A exon
chr5:40355201-40355532
Coord C2 exon
chr5:40355036-40355200
Length
332 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
GACCTGCCGTTGTGTTTCAGCTG
3' ss Score
9.33
Exon sequences
Seq C1 exon
ATATCAACGAATGCTTGATGCAGGGCTTGTGCAAAGACGCCAAGTGTTTGAATACCCGTGGCAGCTTCCGCTGTACTTGCAGACCTGGCACCATGTTGGACCCCTCCCGCAGCCACTGCATCT
Seq A exon
GTAAGTGCTCCAGGGGCAGTCGCAGCATGGGACCTCAGCTCAGTGAGGCTGCGGCATGCTTTGTGCCTTTTGCATATGTGGGAGGGCGCACACTGCCCACACTTGTGTGCAGGATGGGTGTCCAGGGAGCCCTCACACGAAGTGTTTGTCCAGGGATGTTTAATTGCCTCCTGCTCTTGTTCATGGTGCAGCCTGGAGGAAACGTGCCTGCAAGGGTGCTCTGCAGAGGGTGGGGATTCCTTGGGAGGTGTGGGCAGACAGATTCCCAAGGGGGAGTTTTTTTGTTGGACTTAGAGCCAGACCTCAGACGCTGACCTGCCGTTGTGTTTCAG
Seq C2 exon
CTGACAAAGCAGTGTCGATGGAGCAGGGGCTGTGTTACCGCTCAGCAGCTGGAGGTGTGTGCTCCTTCCCCCTCTCCCACCGAATCACTCAGCAGATCTGCTGCTGCAGCCGCGTCGGCAAGGGCTGGGGCAAGAACTGTGAGGAATGCCCTGTGCCCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258:ENSGALT00000016690:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
NA
C2:
PF0068312=TB=PU(86.0=66.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGATGCAGGGCTTGTGC
R:
CACAGGGCATTCCTCACAGTT
Band lengths:
266-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]