GgaINT0059916 @ galGal3
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12866113-12867987:-
Coord C1 exon
chr5:12867844-12867987
Coord A exon
chr5:12866156-12867843
Coord C2 exon
chr5:12866113-12866155
Length
1688 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TACTCTGACTTACTGTGTAGGTA
3' ss Score
7.73
Exon sequences
Seq C1 exon
AACCAACATAAAGCAGTGGATCACTTGATTAAGACTGTCAGAAAAATCTGTTCAACATTGGATGGTGTAGAAACTCCTGCAATAACAGAATCTGTAAAGAAGCTGCGGAGGGCTGTTAATCTTCCAAGGATTAAAGACACAGAG
Seq A exon
GTAAACTTGCACACTAGAAATTGCATTCTGATGTGTGCTTTTTAAAACCAAAGGATAACATTTCATAGTCTTTGGTAGTTGCAAATATTAGCAACAATTTAGACAGGGTTATGTTTTTTCTTTTTTTAATATTTATTTTTATTTTATCTGGTAGTTTCAATGTTTTATTATAACAGTCATTTCCTGTTAATGTATCGATCACTTGGAATCCAACTTGAAGGTATTTTTAAAATACTCTTTTTCTAGTTCTGTAACTGCAGATTTGGGTCACAGCAGCTGCTGTTAAATGTGACCGAAGGAAACTTTATCCAGCTGTCTCTCCTCTAAAATCAATGCAATAATGCTTAGATGAAGAATTCACATAATGTATTTTTTTTGTGCAGTACTTATGTGAAAAGCAATATCATGTTAAAACACTAGCAGTCCCATTCCTGGATTTTGGAGCATATGGGCAAAAATAAAATCTTACCACTAGTGCAGATTTTGATGATAAAATTGGCTCATAGTCAACAGTTAACTTGAGCACAGTTGGTCTCATATCACTTACTCAAAAGTGGTTAAGGGGAAGAATGTGCAAATAAAGCAGCTAAATAGTCTTGTAATGCTATTTCAGGCCATATTAGAGGGAATTGTGATTCCTGTGCTGTTTTCTTGGGTTTTTTTGTTTGCTGTAGTTGTCTGCAGTTTACTTATGTATTTGTAATACTGAGCTGAAATCTTGCAAAATCATAGACTGAATAAATACAGCTGTTACCAGCACTAAAACTCTTGCAGAGAACTGCAGAACATTTACATAAGAGGTTAGGGAAATTCAACATACATAAAGTTTCTTCCTTTTTTTCTTTAAAACATGAAAGTTTTAAGTTTTTGACGTAACTTAATCCTGACAGGATGTTCAGTTAATGCATGGAAGATGTAAGTAGAGCTTTTGTTCTTCTGCAGTTGTGGCAGATGTATTAGCAGTTTTCTCAAGTGTTAGGAATTCAAAAAGTTTTGCTTTTAAATCACCAATTCTGTTTTCATTGGAAGTTTTAGTTTTTATCAAGTTGAATTTGGTGTGAAATCCTTCCTTACTTGAAGGGAGTAAATTCCCATGATCAGTTCGATGCCTGCAGGCTTCTTTAAGCAGCGTCCTTGATGAGACCAGACATTGCAGTCATTCTGTATCCTGTTTAGACTCCCATTTTAGCAGACCAAGGAGCAAAAAACAGCAGATAGTGGCAATATCTACTGCTCAGCTTCCTCAGTTTGACTTTTTTTTATCTTAACTATTCCTACAAAAGATGCCTTTGCAAAATGTCACATAACAGCTATTGGAGCTTAAATTGATGCACAATTAAGCTACTAGCTTCTGCCCTCATCTCTAACAGCCCTGAGTTTTCTCTCTACTGAGAGAAGCCTGAGTACTCTGAGCAATGTTCCAATGTACTGAGCCTTGTAAGGTATGTCAAGATAGTTTTGACTTGACAAAAGTTTTGAACTTGGTGAATAGTTTCTGCATGATGTGGAACTTGGGACACTATCAGTTATCATGAGGAACTTTAATTGAATAAAAAGATGTATTAAATGAACACAAACATGGTCCTAATTTAGGTTTTTAATAATTTCTGATCAAGTTGATTTTTAAGGGCAATGGAAAATGCATGCAGTTTTCTTGGTATTGAAATTTACTCTGACTTACTGTGTAG
Seq C2 exon
GTATCCCTGAAATGTGGCGATGATGCTAGCAAGAGCTCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]