GgaINT0059921 @ galGal3
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12860535-12861537:-
Coord C1 exon
chr5:12861429-12861537
Coord A exon
chr5:12860678-12861428
Coord C2 exon
chr5:12860535-12860677
Length
751 bp
Sequences
Splice sites
5' ss Seq
CAGGTTATA
5' ss Score
1.5
3' ss Seq
AGGTTGTTGGTTTTTTTTAGGTT
3' ss Score
8.86
Exon sequences
Seq C1 exon
ATTGCTATCTTGTGGGACAAAGCTCCTGCAACTCTGGACTTCATTACATCCGAGTCATGCTTCAGGGACGGCCAGTAAGAAAGAAAATATGGGAAGAATAGTACTGCAG
Seq A exon
GTTATATATGCTTCTGATTTGTCCCGACTGCATTTTTGTGAATATTGTGGCTAATTTTTACAGGAGTGGTAATAGATCTGTTGTTTTGGAGAAAGTGTAAATATTAAGTCGTATTTGTTAGCCAGCATAGAATAGCAGCTACTAAACTTTAAGGGCAAAGAATGGAAAGCTGCTGTAAGCATATGCATTTACAATCACTCTGTTGAAGTTGAAAAAAAAATTGCAAATGCCTTGGTCTTAGATATCTGTTTATCAGTACTGGCAGAGAATATCTTTTGAAACACAACCCATAGAGATGCATGTGAAAGAGGAATTGTCTTGGCCCAAATGGTAGCAATTCCAGTTTCTTCACAGTATGCAAGTGCCTCTCATCCTCAATTCAGTGTCCAAATTTCCCTAAGAGAAGGTACCTTGTTAGGCATGACTTCACAGTCCCAACATGTCATTAGAGGCGATGGTTAGATTGAAACCATTCAATTCATTTTTTTTTAGTAGTTCTTGGATTAATCTCAGCTCTAAGCATCCTCACTTCAGAAGAGAACTCCAAGTATTGGACTGTAAAACAACGCAGTTGTCATACAGTTAAGGACAGTAGTTATGTAGAAGAATTAAGATGGGGAAAAAAGTTCAGGAACCATACCTGAAAACTATTACACATTCAGAATGAAGGAGCTGAGATTCCCAAAAACCTGATGCTGCTGGAAGGGGAGGCTCTCTGCAATTTTCTTAGGAGGTTGTTGGTTTTTTTTAG
Seq C2 exon
GTTGATTTTCCATCCCATGCTTTTGATATTGAATATAAAATTCCTCAAGCTGCAAAGACTACTGTGCATCATTCCATAGAAGCATTAGAAAAACCACTGAGAGAACGTCTCCTTGCCATTCTCTCTAGGGATAACACTATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(25.7=100)
A:
NA
C2:
PF0079219=PI3K_C2=PD(3.6=10.4),PF0061315=PI3Ka=PU(12.0=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTATCTTGTGGGACAAAGCT
R:
AGTGTTATCCCTAGAGAGAATGGCA
Band lengths:
246-997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]