GgaINT0059933 @ galGal3
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12851175-12852053:-
Coord C1 exon
chr5:12851944-12852053
Coord A exon
chr5:12851383-12851943
Coord C2 exon
chr5:12851175-12851382
Length
561 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
AGTTATTTTATCTACTCCAGGTT
3' ss Score
7.52
Exon sequences
Seq C1 exon
ATGCTTTCTTCTGGGTTACCTGAACTAAGTGGGGTGCAGGACTTGAAGTACGTCCAGGATGCTCTCCAACCTCAAACAACAGATGCAGAAGCTACCATTTTCTTTACAAG
Seq A exon
GTACTGGCTAAGTGAGGGAACGAAATTATCCACCAGTATCATCCTTTTAGTGGGAGCCCTCTGCTTCAGATCAATGTACTAAAGATGTTGCAAAGGTGGCTGTAGAAGTTGAGTAGTTAGGTTATGCAACCAAAGAACACCCATCACCTAACCAGTGAACTGCAAAGATAAGATCAGTTTCATGTATGATTAATAGCTGTGCTAAAATATTTTGCCTTTAAGAATTACCTTGTGCAAAAGAATTGCTTGAAATAGAGTAATTCTGTTCTGCTGTTTGAGAGTCACATTTTGAATGCATCCCAGATTGCTTAATAGTAGTGTACATGTTGATATCCTTGAAATGCATGCAGTATAAAGAAGCTTTTCCAAAAGCACTTCTGCCCACTGGGGAGGGAAGGATTACACTTCCAATAAGAGCAAATCAGTGTGTGCATATAGTGTAAGTGACTTGTTGCTGTGTGACAAAATGTATTACTCTATCCCACTTTAAATGGGGCTGGACTGGAGTGATGAGGAGGGTTTTGTGTGTTATAGAATTTGAAGTTATTTTATCTACTCCAG
Seq C2 exon
GTTGATTGAATCCAGTCTGGGAAGTGTTGCCACAAAGTTCAACTTCTTTATTCATAACTTGGCTCAGCTGCGTTTCTCAGGACTACCTTCTAATGATGAACCCATCCTCTCATTTTCTGCTAAAACATATTCTCTTAAACAAGATGGCCGCATCAAACAGGTGTCTGTATTTACATATCAGAAGAGATACAATCCAGATAAGCATTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PD(4.6=27.0)
A:
NA
C2:
PF0078719=PX=PU(17.7=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTCTTCTGGGTTACCTGA
R:
TGCTTATCTGGATTGTATCTCTTCTG
Band lengths:
313-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]