GgaINT0062199 @ galGal3
Intron Retention
Gene
ENSGALG00000015721 | SVEP1
Description
NA
Coordinates
chrZ:65128052-65129065:-
Coord C1 exon
chrZ:65128889-65129065
Coord A exon
chrZ:65128097-65128888
Coord C2 exon
chrZ:65128052-65128096
Length
792 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTAG
5' ss Score
2.02
3' ss Seq
GTGATCCTGTCTTATTGAAGCTA
3' ss Score
6.81
Exon sequences
Seq C1 exon
AACCAGTGAAGTGCCGAAATCCGGGAAATCCAGCAAATGGCCATATGTATGGGGATACATACAGTGTTGGCAGTCAAGTAACTTTTTCTTGTGAAAAAGGTTTTCAGCTGACCGGAGTGACTAAACTTACATGCATGGAGTCTGGAGAGTGGAGCCACTCAATACCATATTGTGAAG
Seq A exon
GTGTAGTTCATGGGGCAAATGCTGATCGTAATGTGCATCATTGTAGAGATGAAAGGGGGAAGAGTCGTAGTTTAGAGACGTCAGAGACCGTGACAGCTAATGACATTTTTTTTCTAGCAGACTTGAATCACAAGATTGAAGTCTCTATTGTCTTAACAGATGTAAGCGCCAACTAAAGTTTTTCTGACAGTTTGCATATTCACAGTGGAATGCTTCTGCAGATTCTCCAAAGTATCAAAGGTGTAGGTTCATCTCATTACCTTCTTCTTAATGTAAGCTTTAAAAATGTCTTTCTTTTCCACCCAGCCTCCTGTTCTCAAGCAACTTGTGGGAAAATAATGTCTTAAAAAGTATTAACAGTGTCTCAGTGTAAGATGCAACAGGATGGTGCACATAGACATACATGGCACAGTTGTGAAAATTGTTTTAGAAAAACCAGGTGTTTTTCTAAAACCATTGTTTAGAAAAAATGAGGTGAGGCAACAGTGAAAGGAAGGGGTAGCAAAGAAAAAAAATAAAGATTTTGTCCTTAGGAGGAGGTGGACATGAAGTTGTGTTGATGGTAAAGTGTACGGTATGCGGAACAGTTCTAGCTACCTATTTCCAGTTAGTCAAATCATTCCGTAAGTTGAATACAAATAAAGAGCCTTGAGTGTCAGCTGCAGCTTATCCAAGAACTCAGTTTTTCCAGGGGGTTTATATCTTTTCAAACCTATTTAGTGAAAATAAATAAAATTATGTTTAAGGAATTTGTGTTGCATCAACTTCTCTTGTGATCCTGTCTTATTGAAG
Seq C2 exon
CTATATCCTGTGGTCGTCCCATATTCCAGAGAACAGGAATCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721:ENSGALT00000025350:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(95.0=95.0)
A:
NA
C2:
PF0008415=Sushi=PU(22.6=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGTGAAGTGCCGAAATCC
R:
GGTGGATTCCTGTTCTCTGGA
Band lengths:
222-1014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]