GgaINT0062209 @ galGal3
Intron Retention
Gene
ENSGALG00000015721 | SVEP1
Description
NA
Coordinates
chrZ:65108151-65109936:-
Coord C1 exon
chrZ:65109763-65109936
Coord A exon
chrZ:65108328-65109762
Coord C2 exon
chrZ:65108151-65108327
Length
1435 bp
Sequences
Splice sites
5' ss Seq
AACGTGTGT
5' ss Score
3.87
3' ss Seq
CACTCCTTTTCTTTCAACAGCAA
3' ss Score
8.93
Exon sequences
Seq C1 exon
AGACCAGATGCAAACTGCCACTTTCTTTGCTGAATGGGAAGGCAATTTATGAAAATAATACAGTTGGCAGTACTGTAGCATATTTCTGCAAGAGCGGATACAGTTTGGAAGGAGAACCTACAGCAGAGTGCACAAGGGATGGAAGATGGAGTAATCCTTTGCCTCTCTGTAAAC
Seq A exon
GTGTGTGTTTGCTTTGCAGTGAAAAAGTGGTTTTAACTTGAAAGCATTAAAGGCTAGTTACTCTTAGTTTATAATGGTAGTAATTGAGAGCGACTTCTGCAGATATTGGTGGAGGTGTATTGTAGTTTTCTTTTGGAGTGGTCAGGAGCAGAATTTGTTACTCACAATTTAAAAAATCGGTTTGACCTACGTTTGTAAATTTGCTGGTGTGCATCATGTTTTTACAAAGGAACAAAGGAAGCAGTTACTGAGATTGCCAAAGCATTATTTTGTCTGAGTGCATTTGCACGACATTACCGTCATGCAAGCAAGAACAAGCTGTATTCAGTGTAACTCCTTTTAGTTGGAAAGCTGCTATTGAATAGGGTCAGTTGGAGTCAGCAACGTGATTTATGAGGAGCAGGTGAGAGAAAAGTACTTGTTCAGCCTTTGGAAGAGAAGGCAATGGAGACCTCCTCATCTTTGTCTAACTATTGGCAATGTGGAAATAAAAAAGAGCTGAACTTCTTTCGGAGGTGAACAGTAGTAGATTAAGAGACAGTGAACCCAAGTTGCAACAAAGGAAGTTCCAATTAAGTATATGAAGAAACTGAAATGGGACCAGAGAGGGTGTGAAACGTCTATACTTAAAAATACTCATATTTCAGCTATTCACGGTCCTTTGTGGCCCAACCTAGTTGGTCCTGCTTTGAGAAGAAGGTTGGACTAAATGTCTAAGTAAATCATTCTGTGATTTTATGAAATAGCACCTTATGTCCACTGTGCGCACCTATAATAGCCATCCCTTTGAGATCTTCTGTTGTCTTATGGTAGTAATTGAGGCGTTATAGGTTTTGTACAGCAGCAGGCTCACAGGATATTTGTTTTATGAAGCTGGATTAACCTCTGATGTATACTAAGTTCAGCCTTTTCCATGCTCATGGTGAGATCAATAGACTATCCAAAAATAGCTCAGCAAGTTTACAGCCAGTAGAAAGTAAGATTATTATAGAATTTTTGAACTCTAATGTCTGTGCTCAAGGATCTGGAGTTTGTGCTGCTCTGTATCTGTCCAGGCCCACAAATCAAGGAATGGAATGAGTCTGACTCTTTTTATTAAATTTTTTGCATTAACGCAATGGCAAGCAGGAAGGAAAGAGAGAATGATGTGATTGTAAAATGTAAGATACTTTTCACTTAGATCCTTAACTCTATCTTCCACAGACTTCATTAGAGTATGGTAGCAAGCTTTATGACCGAAGAGAATAAAAACTTTTATCATTATATATAACCCAAATCTCATAACTTTACAGCAAATTACAAATGTGACTTGTGCTGAGCATCCATTTCTATAGCTCTTCATATGAGTTGAAGTTGAAATTTGCAGAAATTCTTCTAAAGTTCCATTCCTCTCTTTCTCTTTTTTCCTCTTCCCTCACTCCTTTTCTTTCAACAG
Seq C2 exon
CAAACCCTTGTCCCGTGCCTTTCATAATCCCAGAGAATGCCCTTCTCTCTGAGGTGGATTTTTACGTCGGGCAGAATGTGTCCATCAGGTGCAGGGAAGGCTACCAGTTGAAAGGGCAGGCTGTGATCACTTGTAATGCTGATGAGACTTGGACTCCAACAACAGCTAAGTGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721:ENSGALT00000025350:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGATGCAAACTGCCACT
R:
ACACTTAGCTGTTGTTGGAGTCC
Band lengths:
346-1781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]