GgaINT0066657 @ galGal3
Intron Retention
Description
NA
Coordinates
chrZ:42866380-42866935:-
Coord C1 exon
chrZ:42866695-42866935
Coord A exon
chrZ:42866399-42866694
Coord C2 exon
chrZ:42866380-42866398
Length
296 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CAAAAACCTTTACTTCTAAGGAA
3' ss Score
4.08
Exon sequences
Seq C1 exon
GTTTTTTCCCCAAGTAAGTTGACTGACATTTCTACAGGTCCAGATGACTCCCATTTTGTCTGGAAGAAGAATGGACAGGAAATGAAGGCATGCATCACTGAGCAGGCTCACAGGCTGTTTGATGGCAGAGTGCATGTCTTAAGTTGGGTGAAAGATTCAGTATCAGGAAACACAAAATATAAATGTTCATTCATCTCAAGGATTGGGAACACAACATCAGAAGTGCTCATCAAAGTGGAAG
Seq A exon
GTAGGCTGGTTCTGACTGTATGCTTTTTGTATTATCCATGTATATGTGTTGCTGCTAACTCTCCTTTGCTCTACTAAAACCCACCTCCTTTGTTTATGAAAAGGTTTTGCAGACACAGAAAATTGCTTCTTCCTCACCCTCTTATAGAACTAACCTGTATATCAGCAGATATACACTAGAAATGAAACTAAAACTGTTAAACTAATTGACACCAATTTTATGCGAGTACTGAAAAAAGAATATAAAATAGCACTCTGCAGGAACTATGCAGGGTGACAAAAACCTTTACTTCTAAG
Seq C2 exon
GAAGTGATAAAAAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024457:ENSGALT00000041370:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]