GgaINT0069558 @ galGal4
Intron Retention
Gene
ENSGALG00000009268 | FGG
Description
fibrinogen, gamma chain precursor [Source:RefSeq peptide;Acc:NP_990320]
Coordinates
chr4:19810516-19811032:-
Coord C1 exon
chr4:19810654-19811032
Coord A exon
chr4:19810561-19810653
Coord C2 exon
chr4:19810516-19810560
Length
93 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
GTCTTGTTTCTTCTCTTCAGTAC
3' ss Score
8.86
Exon sequences
Seq C1 exon
CTTCTGCACACCTTGTTTCACCTTTCTGCCTCCTTTAAGACCTGGCTGGAACAGAGATAAGGCAGATAAATGGAAAGCAAGTTCTGCAAATGGGAGGAGTAAGAGATGCGTGCAAATTCTGGGAATCCACCTCACCCCCTACTCCACCTCTTCCCGCTACCTCACTGTGCCCGCCCCCATCTCCAACTGCTCCCTTAAACCTCTGCTGCCATGCTCTGGGGCCAAAGCTGGCAGCCCATAAAGGTGCTGCCTCGGCTGCTGGGGAGAACACTTTCGGCTGCTGACGGTACGGATGGCACCCGGTGAGATGGGGCCAAAACCAGGCAGATGGGTGCCTCTAGGGCATCTCCTCTCTCTGCTCTTCTCCACCAGCATGGCG
Seq A exon
GTAAGTGAAGGTGAAGAGTGTTAGAAAACTTGTCAGTGCTGAGAATTCTTCTGGAGAAAACTCACTGAAAGTGGTCTTGTTTCTTCTCTTCAG
Seq C2 exon
TACATTGCTACCAGAGAAAACTGCTGCATATTAGATGAGCGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009268:ENSGALT00000015079:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087025=Fib_alpha=PU(8.3=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGGCAGCCCATAAAGG
R:
GCAGCAGTTTTCTCTGGTAGCA
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]