GgaINT0073740 @ galGal3
Intron Retention
Description
NA
Coordinates
chr4:34386214-34388296:-
Coord C1 exon
chr4:34388238-34388296
Coord A exon
chr4:34386479-34388237
Coord C2 exon
chr4:34386214-34386478
Length
1759 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ATTGCTCACCCAATTTTTAGGCT
3' ss Score
8.03
Exon sequences
Seq C1 exon
GATTTGAATCATTCAGAACAGGCTGGAGCATCTCAACTAGAACCTGCATTACCCCCAAG
Seq A exon
GTAAGTGCAATTCTTCACTGATTCACTTAACAGAGATGTTTCTGAATTAGTTTGTGTAGTTAGTCTCAGCATAGGTATTTCTGACTCTGAACCTAACTCAGTAGGCTTAGGTGCTTTTAATGTGTTCTCTAATAAATAAACAGGACCAAGTTGCTAGCTATTTCATACTTGTTTGTACTGTATTGGTATGAGCAGAGATTATAGGACAGCTGTTTGGCTTTTCAGCTAATGTGCAGTGGCTGCTGACAGTCATTCCTTTCTGCATCTTTAACCTTTTCACCCTCAGCTGAACATAGAACATCCTCTCCTGCATGTTGCTGACCTTTTGATCAGCAGCGCTTGCACTTGTGGCTGCATTTGAGTGGTGAAGGAGCAGAGGTGGCAGATGCTGCCACCCCCAGAATGGGCACGTGCTAGGTCAGCACCTTCCCGGAAGCACAGACTAATTTCTACAATATCTCTACTGTTTACTTTAAAAAAAAAAAGAAAAGAAAAAAAGTAAAGCAGCAGAATAAATTATAACCTATTTTTATTCCTTTCAACAATCAATAAAGAAAAAAAGCTTAGGATGAGGCCAGGAATGAGGAGAGGTGGAAACTGAGCAGGGCTAGAAATTATTTTTTAAATTTAGGAAATAATCCATACTCAAATAGGAGTTGAAAACTGTATCCAGGCGCACTTGTAAATCGCCAACATCTTCTAAAGTGGTGGATGACACTCATGAAACATGTCAGAAGAATGCTCTAAGTCCCACTAATGCATATTTGTTGTAAGTGTTGATAACTTTTATAGATCCTTGAGGAATTCATACTAGCAAATAATTATTCTACTGCAGAAAACTGCAGTAATGCACTGAACCTTTACTAGTAACAATCAAACAATTGTCTTTTTGGAATTGCTGTGGTGCCAAATTTCGTAGTAACACAAAATTTTGCATCACGTATACAATGCTTGTTTATAACAGGGGTGACTTTTATTAGTGAATTGTCAATTAGCAAGTTGATTCTGAAAATTGTTGCTCACGTACACTGTATAGGCAGCATTTTTAATCCGTGCTTACTAAGGGGAATTTTTAATTTTTTTTTTTCTTTTAAATCACCACTATTGGTTAAACTCCTTGATTATGGTTTCTAAATTACTGGTATGCTAATGAGAGTGAGGTACCTCATTACCATTACCAAGAAGCTTGAGCATTGTCACTGGTGTTTTTTACATAAAAATGGGTAAATCATGCCACTGATGTCATTGTACCAACTGGTGTCATAGATCATGAGTTTTGGCATAGGCTGAAAGGTCACCTCAGATGACATCCTAGTGAATGAGTTGGGCTGATTCCTGAAGACCTGCTTCATCAGCTGAGCTTCTCAGGGCTCTCAGTAAGGCTCTCCAGTGGAAGGACTGCATGCTAAGGCAGCTGCAGTCAAAGCTCTTTTAGAGGATGGATTGCTGAAGGAAATCCTGCGTTATGTAGGGGGCTTTTGAGAACACTGGCAGAGGCTGTTTGTAGGCAAAAATGGTGAGCAGACTTGGAAATATGTAGTAAAAGAATCTGTCTAAGTGCTTAATCATCTGGTCTCGTTTGTCTGAAGGTTTGTGTCATGTATTCTTGGAGAACTTCAGTTACTACACACCCTTCTATTATGCTGGTCATCGTGACCATGTTCCCTTATTGCAAGCTCCATAGCTAGGGCTGTGGTGGAGAGAGGGGTGGCAAGCCTATTAGTACACGTATTTCTCTGATTGCTCACCCAATTTTTAG
Seq C2 exon
GCTTGTGGATGGAAAAATTATACCAGCTCGACCTCCCCCACCTAAAGGTGTTCCTGGAAGGCCACCTCCACCAAAACTCTCTGCAACCAAGACCTCCTCCCAGAAGGATGCTCTTTCCCGATCCACTTCTGACATTGCTTCTGATAAAAAAACAAGCAAGCTCAGATTGGGACCCAAGAGAACAAAAAGCCAAGTCTTAAAAAATCAAGATCCAGCTTTACCTCCTAGACCTAAGCCAGGTCATCCCCTCTATAATAAATACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081:ENSGALT00000016385:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTGAATCATTCAGAACAGGCTGG
R:
TTTATTATAGAGGGGATGACCTGGCT
Band lengths:
318-2077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]