GgaINT0073748 @ galGal3
Intron Retention
Description
NA
Coordinates
chr4:34379415-34379888:-
Coord C1 exon
chr4:34379695-34379888
Coord A exon
chr4:34379465-34379694
Coord C2 exon
chr4:34379415-34379464
Length
230 bp
Sequences
Splice sites
5' ss Seq
TAAGTACCT
5' ss Score
-1.81
3' ss Seq
GGTTGTTCTTTACTACATAGGTA
3' ss Score
7.28
Exon sequences
Seq C1 exon
AGGCCCAAGATGTGTAGCACGATTTGAATACATCGGAGATCAGAGAGACGAACTCAGTTTTTCAGAAGGTGAAACAATTATCCTTAAAGAATATGTAAATGAAGAGTGGGCCAAAGGAGAACTCAGAGGCACGTCTGGAATTTTCCCCTTGAACTTTGTGGAAGTAATTGAAGATCTGCCTGGAAAAGGTATAA
Seq A exon
GTACCTAGCAAAAACATTCAAGAACATGGTTTTGTATCCTAAACATAGGGATATAGAAATCCAGAATGACAATGCACGGGAGAAGGGAGGTGGAAAGAAGATGGATGTGATAAATCAAATGGAATATTATGATTGAAGTTAATCTTAATAGTCACTTTAAATATCTAAAGTTGCTGACATTATATTGAGTAGTCATTGCTACTATTCTAAGGTTGTTCTTTACTACATAG
Seq C2 exon
GTACAGGAGGAGCACTGAAGAAAAAAGTGGAGGTTTCTTCTCCCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081:ENSGALT00000016385:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146041=SH3_9=WD(100=74.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCCAAGATGTGTAGCACG
R:
CTGAAGGGGAGAAGAAACCTC
Band lengths:
244-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]