GgaINT0073930 @ galGal3
Intron Retention
Gene
ENSGALG00000011982 | PDE5A
Description
NA
Coordinates
chr4:56238844-56242877:+
Coord C1 exon
chr4:56238844-56238938
Coord A exon
chr4:56238939-56242789
Coord C2 exon
chr4:56242790-56242877
Length
3851 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGGGTCTTTTTGGTCCTCAGAAG
3' ss Score
7.28
Exon sequences
Seq C1 exon
AGCAAACTGACTGACTTGGAAACGCTGGCTTTGCTGATAGCAACTCTAAGCCATGATTTGGATCACAGGGGAGTGAACAACTCTTACATACAAAG
Seq A exon
GTAAGGAAGTATACTGAGAGATCTTAAATAAAAAAAAATGAATACGCAAATACACAGAACGAAGTTACATAAAACTTAATTGATTTGACAATGTGAGGTTGTGCAAAGAAAAGGTCTTCACTAAGCAGTAAGCACAGGAAAAGCCAGAGACATTTAAGGAGGCCAAAGCAAAGACATGACTTGTTGAATCATAGAATGGCTTGGGTTGGAAGGGACCTCAAAGCCCATGTTGTTCCAACCCCCTGCCATGCACAGGGCTGTCAACCACCAGATTAGGCAACTCAGGGCCCCATCCAAGCTGGCCTTGAACACCCCCACGGATGGGGCATCCACAGTTTCTCTGAGCAGCCTATGCTTGGGCCTCACCACCCTCTGCATATATAATTTCTTCCTAACATCTAACCTATATCTCCCCACTTTTAGTTTAAAGCCATTTCGCCTTGTCTTATTGCTATCTGCCCATGTAAAAAGTCAGTCTCCCTCCTGCTTATCCTTAAGGGCACAATGAGGTCTCCCCGGAGCCTTCTCTTCTCCAAGCTAAACAAGCCTGGCTCTCTTTCTTTGTAAGAGCTATGCTGAAGCCCTCTCATTATCTTCATGGCTCTTTTCTGGACCCTCTCCAACTGCTCCATGTCTTTCTTATGCTGGGGGCCCCAGGCCTGAACACGGTACTCTAGATGCGGCCTCTTGAGGACAGAGTAGAGGAGGGCAATCACCTCCCTCCCCTGCTGGCTGCCACTCCTTTAATACAGCCCGGGATGCCGTTGACCTTCTGGGCTGCAAGTACGCACTGCTGGCTCATGTCCAGCTTTTCATCCACCAGAATCTCAAGTCCTTCTCCACCAGACTGCTCTCAGTGAGTTCTTCTCCCAGTCTGTACACATATCTGGGACTGTCTTAATACAAACGCAACACCTTGCACATGACTTCACAGAACCAACTAACTACAATGGCAGATGAAGTGAACTCTTTGTCGACAGTGCAGGGGCCGCATCTTCCTACTCCTTTTGCAGATGCCCCATCCCCCATTTCCCACACAGAGACAGCAAAAGATCTCAGCTTCTAAGTGACAACATGCCAAAAATGTGCAGTTTTGCAGATTGCTCACTGCCCATCCAGCTGTTCCCCATCTAGTCTGGCCTGCACAGAGCTGAGATCTGCAGCCATCTTGATGATTCCACATCATTTTGAACTCTGACTGTCTAATACGTGACTTAGTTGTGGTTTTCCAGAACTCAAGTAGATTTGGATAAGACGCACATTTAAAATCACATTACAAATTCATGACTGTTGAGCATTATTTTGGGTTACCTGGACTCTAATTTCGATCAATTCCAGAATTACAGAAAAGGCTTCATAAAGCAAAAAGTATAAATGTATTTTAACACCCTGAAACAAAATATTTTTATCAAAAAAATATTTCACTCTGAAGTTATCAAAATGAATCATCTGAACTCTTCTGAAAATTTCTCTATGTTTTCATTTTTAACTAACAATATATTTTTTTAAAAATGTAGTTTCAGATCTGCACAAAATGTGTTTTTCAGTGAATTTAATATTCAGTTCAAACAGTATAAGATTCTTTGAATAAATAAATAGCTTGACTTAAAACATGGTAAAATGTTATTACTGTGATATGACAATGTGTCCTGATCTGACCAGAGAAGGGGAAAAGATACTAAGGAACATTTGCTTCTATCTTTTTCTGGTAGAGCTGGAGAGTGGTTTTGAAGCTTTGGAAGAAGTGGTCTGCTCTTCTTGCTGTGCTGAAATAAGATGCTAGGGTAGGAAAAGTTTGTTCCAGGCAGAGAATACTGAAAGGCAGAAAATAAGTAAGCTGAAGCAGAGTACTTTCCTTTTGGGATGCATGTCCAGAATAAAACTAAGACTGATGTGTAAAGCAAAAGGAAAAAAAAAGCCACAAAATAGAATGTGTAACCTTTCTCTAGTGCCCTAATAGGGGAATCCAGCAGTAACTTGTAGCCTTGTAGTGATTAGAACTGGTCAGCTATTTTTTGCTTTATTTATTTAAAAATAAATTTCCTGGAAGACATCTGGAGAAGCGTCATCTCCTCTCAGCAATGTCCTGGGAAAGTGTCATAGACAGCAAAATTTAACATTCATACAGGCTGTAAAGCAGAAATGACCACAGCTTAATAATTCTTTCTCAATAAAGGCAGTCATGTGAATTTTGCTTTTAAATTCCTCATGTACATTAAATGGAAAGTTATTTTTTCTAGAAGTTGATCTCTTTTGTTGGATCTCTTGGAAGTGGAGAAAGGGGACAGTTGGCAGATGATTCTTTTTTTTTTCAGCAATGGTGTTCCAAAAATTGAAGTGGTCTTGGTAGCAGAAATACAGGAAATGAACTTTTTAAAGGTCTTTCATAGTTATGCAAGGGTTTTGTTCTCTCTCTCCTTTTTTTTTTTTTTTTTTTTTCCCCCAAACCCACATGTAAAATAGACGAGCACAGAGTATGAAAACTGCATAACCAAACCTCTGTGTTCTGAAAGCAATGGTGTCCTTTGCCCTGGCGTAGTGGTTTAACAGAAACACTGTGTACTACAGAATTAAGAACCTGAGTTTATTTCTAGCACTTGTATCTTCCCAGACAGTCAGGGTCTGTAAGTACTGAGCAGGCTGTAGTTTGATGCTGTACTTGGGAAGATAACCTAAGAATTTTCTCACATATTTCTCTCTTCAATCAGGATGAACTTTAAGGACATTGTATGCATCCCATTTAACTCAATGGGAATTTCACTCAGCATGCATTGGCACAGTCCTACAACTTGTTTTCTAACAGAAACATGCAAACATATTTGCTGTATGTTCTCCTTGCAGTGGTCTCAGAGGAGGTGCTGGGCAGCCAGCCCATAAACCTCAAGGGCTCGTATCCTCTAATCTCCCTTTCTGTGTTTTTGTTTGTCTTTCCATCTTTCTCTCGACATTTCTGTGCTTCTTAAATCCCTAGAGGCTCCTCTTATGGCTTTTATTTGAGTCTCTGTGTGCATTCACTTTACATAGGGACCCTGTGCTGTAACCACTTATTCATGTGCACAATCCTTATCCATAAAGAACGTCAGAATTTCCCAAATGATTAAACATTTGTAGGTCAAATTATAACTACAGTAATAGATTCAGGATCGGCAGCAGAACAGAATTCAAAGCACCCTGATTTAGTTAAAGAGATGAGATAAATGATGTGGGAACAGGGTTTGAAAATAAAGATACAGTAGCAAAAGTTTAGAAAATTATGCAGTGAGGATGAGAGGGAAACTAGAAATACTCAGAGGAGGAATTTAATCTATTTTGTCTAAAGCTGCTCAAACAGCATTTTTTTTTTTTTCTGGAGTAAGCTTTAAATTTTATATCTACGTGGTTGATTTTATACTCATTTCCCACTGCCTGTAGTACAACCAACATCTTGTTTCCCTTTTGGATTTCATCGTGGGTGAAGGGAAGGTAATGATACTGCAGTAGTTTGGTCATGTGCGCTTACCAGCACAATAGGAAATTATTTGTTCAACATCTGGGGCCCTGCACCAGAGCCCACTGAGGTCAACAGGAACTTTCCCAGTGATATCAGTGTGCTTTAGATTAGGTCTCATTATTGAAGAAAACTAGAGTGGTCAGTGCTCTGACAAAGTAACAGGGTTGTCTTTTTACTCCCCCTGCAGCCTTCCAAATGTATTCATTGAGTTGCACAGAAGGGGGAAAGGAACTGGTTAAAACAAGCACTGGTGGGTGGGGCAAACTGTTAACAAGAAGAGGACGTTATAAAGGAAAGTATTTTTGGATGAGAATTACATTTAATTTGATTTCTTCATCTGATGGGTCTTTTTGGTCCTCAG
Seq C2 exon
AAGTGAACATCCACTGGCTCAACTGTATTGCCACTCCATCATGGAGCATCACCATTTTGATCAATGCCTGATGATCCTGAATAGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982:ENSGALT00000019550:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(13.0=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]