GgaINT0075166 @ galGal3
Intron Retention
Gene
ENSGALG00000015623 | E1BZN8_CHICK
Description
NA
Coordinates
chr4:84954207-84955221:-
Coord C1 exon
chr4:84955136-84955221
Coord A exon
chr4:84954448-84955135
Coord C2 exon
chr4:84954207-84954447
Length
688 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
CATTTACCTTTATATCTTAGCAA
3' ss Score
5.15
Exon sequences
Seq C1 exon
AAATCCAGATGAAGATGAGAAGCCATGGTGTTACATCATGAAGGACAACAGTTTGTCTTGGGAATACTGTAACATTCCATCTTGTG
Seq A exon
GTATGTAAAATAACTCTTAAAATCCATCCTATGAATTAATGAAGAAAGATTTATTGACACTAGAAAAAGCTTTCACTGTATCATTTTGAATGTTCTACTATTCCCAGGAATACTGAATGTTTTACTGTTTGCAGTAAATCAAGTGACAACAAGCTTATTTTGCTTTTCTTTTCTTTTTGGAGTTGTGATATGACTGGTGATTTTTGTCAGGCAATATTATCAATCAGCAGTGTCATACTGCTGCTTTCGACTACAGTCATTCCAATACGAGCACACTTTCTGCTGAAACATGAAAGGCATCAGAAATAAATAATGCTTTTTAACAAATTGTCATTGCTCAGTGAAGCAGGCTCAGGAGATGACTGGTCCCTGTGGGCAAATAGAGGACTGGAGTCATATGACACAGTATATAATTCTGAAAACAAGATAGCGCTCCTCCTCTAAATTAATATTAAACTGTTGTTAATATTAAAGCTGACCTTTAGAACAGAGCTTCAATTTGAAAAGTCAGTTAATCATGTGGTCCTTCCATTCTCCATTTTTGGTTCCAATACTTTTGATTGATGACATTAACACAAGCATATTAGTCCAATTAGAATTGCCAAGCTCAGTCCAGAATCCAAACATGATGACATGACCTTAGAAACACATGATTTGCAGTCTGATGCCATTTACCTTTATATCTTAG
Seq C2 exon
CAAGCAGGGAAAGGAGGCCACCAGTTCCAGAAGATATTGACACTTTTGCAGTTGCCAGAAGGCCATGTGGGAGAAGACATAAAAAAAGAAGTTTTGTGAGACCTAGGATTATTGGAGGTTCTTCATCTTTGCCTGGATCTCATCCCTGGACAGCAGCTATATATATTGGAGAAAGTTTCTGTGCTGGATCTCTTATTCAGACTTGCTGGGTTGTGTCAGCAGCACACTGCTTTGCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623:ENSGALT00000025185:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(34.1=93.3)
A:
NA
C2:
PF0008921=Trypsin=PU(18.8=54.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCAGATGAAGATGAGAAGCCA
R:
CTGTTAGCAAAGCAGTGTGC
Band lengths:
326-1014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]