GgaINT0075167 @ galGal4
Intron Retention
Gene
ENSGALG00000015623 | HGFAC
Description
HGF activator [Source:HGNC Symbol;Acc:HGNC:4894]
Coordinates
chr4:81501939-81504698:-
Coord C1 exon
chr4:81504458-81504698
Coord A exon
chr4:81502079-81504457
Coord C2 exon
chr4:81501939-81502078
Length
2379 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TTTTCTCTTTTGTATTACAGTCC
3' ss Score
9.47
Exon sequences
Seq C1 exon
CAAGCAGGGAAAGGAGGCCACCAGTTCCAGAAGATATTGACACTTTTGCAGTTGCCAGAAGGCCATGTGGGAGAAGACATAAAAAAAGAAGTTTTGTGAGACCTAGGATTATTGGAGGTTCTTCATCTTTGCCTGGATCTCATCCCTGGACAGCAGCTATATATATTGGAGAAAGTTTCTGTGCTGGATCTCTTATTCAGACTTGCTGGGTTGTGTCAGCAGCACACTGCTTTGCTAACAG
Seq A exon
GTAAACTCACAGCCATAGGTGTGACGGTAGGTCCCCTCCTCTCTGGCATCATGTTCTTATGAGTCACAACAAACCTGAATTGAAACAAGTGAGAAGGAAGACGAGATTACAAAATGACAATCATTTTCAAATGGAGTTGCTGGTAATCTGAGTGCAGCACACGAGCCAACACATAGCATGGAGTCCTGTTTTCCTTGAGGAGACACAAAGATGCTCAGTGGGCCAACAGGAGTAAGGTTGTGCTGGGTGTCAGGATGGGAGGACATGGAATGAGAACTTGAATGTGCAGGTATCTGCAGGTGGATATAAGTGTTTATTTTCTCAGCTACCTTTTTGCAAGTGTGTGCCTGCTTTGAGGTGTAACAGAGATGACTATGTTCACTGCTATGTTTTTGTTCAGAAAGGTTGAAAGAGTCAAGTGGTGATTTAAAAAAAAAACAATTCTTTTTTTGGCCTCCAGCTGCAGGTCACCAGGGAAATGATTGTCTATAGGATGCCCTTACTTTATTCTAAATACTTAATTTTCCACAAATGCTGAACACTTTTTCTGATTTCAGTTTGATCATGTAGATGGTAAAAATATTACATCATTTCATACAAATTGTTCCTCTGCATAGTAAAGGAGCCAAGAGAAACAGAAAACCTTGTGCCAGAATGCATACACTGATAGCTTGTAGACCTAATAATACTGTTGTGAATGCTGTACTGAAGCATTTGCAGCTCGAGCCACAACGCATTTGTTTTTCAAATGTTGTGAAATAGCTACTAACTTTGGCAGCTATTCAGGACATTTCCACCCACTTCCAGCTGGTGGTTTGTTACATACAGATTTTCCATAATTACTGCATTGTAATTTGCACTGTTCTGTATGTTTAGTACTTCTAAGTTACCCACAATTTCAACTGCTTTCCACTAGGCGACAATAGATCCTTGTGGAGCTAACTTGGTAGTTTTTTTCTTCTTTTCCTGTTCTGCAGCCTCTCCCTTTTTATTTCTTCTCCTCAATGAATCATCTGTATGTCACAGTTAAACTATTTAGTGCTTTTAAAATCTTTTTAAAATACTATCCTGGGAAATGAGCTTCCACTCTGTTTCATGTTCTCAAAATCTGATTTTCAGAGGGGCTAGTATACTTCCATAAGGATGTTGAGAAAATCCTGGCCTTACATATTGATTGAAGAATATATATATATATATATATATATATTCTTGCTTTCCAGTTTCAAAAAAAGTAAAGTTTAAGGTCTGTTAACCACGCACATAGTAATTGTTTAGGGTAGCTGCCTGTTTTCTGTGCTTCAATTAGTCAGAATCTCTCTCCATCAAGTACACTACTGTTTATGATTGTTTTGTGCTCAGAGCAGAATTTGCAGTGCTTTTATATCTGACAGCCACCAGTAATGCATGGAATTACAGTTGGGGAAACTCTGTAATGGTACTGACCACTCTGGATCTGTGCATGATGCATGATTGGTGTTTTCTGCTCCTGTACCAGATAACTAAACATCTGAGCTCTTCCAAGTTAAGGGGACTCATGAGCTCAACTTACTGCAGACTTAGGCACATGGAAATCAAGTTGGTTTTAAAGCATTGAAAAAAGCAAGATTGAAATTTGAATTCTATTGCTTTCAAAGCTAGAGAAATTATTCTTTCCAAGTTCTTCCTGATTATTCCCAAGTTTCCCTTTCTTCCCAACTCTCTGTCCTCTCTTACGGGGACAGGCTGAACTAGGGTTGTTTAGACTGGAGAAGAGTCTGGATCCAGGGAGACCTCATGGTGTCCTTCCAGGACCTAAAAGGGGCCTACAGAACAGCTGGAGAAGGGACTCTTTATCAAGGAGTATAACGATAAGGCAAGGGGTAATGGTTTTTAACTAAAAGATTAGATTCAATATTCAAAAGAAATTCTTCAATATGAGGGTCGTGAAGCACTGGTACAGGCTGCCCAGCAAAGCTGTCAATGTCCCATCCCTGGAAGTATTCAAGGCCAGGTTGGATGAGGCCTGGGGCAACTTGATCTAGTAAGGGATGTCCCTGCCCATGGCTGGGGATTGGAACTAGGTGATCTTTAGGATCTCTTTTAACCCAATGATTCTGTGATTCTGTGGGTGTAATTCTGTCAAGAGGGAACAGCCTTTAATTAGGTTAACAGTGGTCCACAGAGCATGGAACTCACTATAACTTTAGTCAGCTTTCTCCTAGCCCACAGTAGGTAAGAAGGCTGGGAGACAGGTGAAGGCATTATGAGAATGTAAGGTAAATAATGGGCCGGCTGTGGATCTGAATTTATTAACAGTTAATGGTGCACACAGCCATTGGAAAGTGGTTTTCATCTGTGTTTCTAAATACAGAATTGTTTGTTTTCTCTTTTGTATTACAG
Seq C2 exon
TCCTCATAAATCCTCTATTAAAGTTGTTCTTGGTCAGCACTTCTTTAATAGAACGACTGATGTAACGCAAACATTTGAAATAGAGAAATACATCTTATATCCTCAGTATTCAGTGTTCAGCCCTACTGAACATGATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623:ENSGALT00000025185:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.8=54.3)
A:
NA
C2:
PF0008921=Trypsin=FE(20.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]