GgaINT0075168 @ galGal3
Intron Retention
Gene
ENSGALG00000015623 | E1BZN8_CHICK
Description
NA
Coordinates
chr4:84949435-84951827:-
Coord C1 exon
chr4:84951688-84951827
Coord A exon
chr4:84949576-84951687
Coord C2 exon
chr4:84949435-84949575
Length
2112 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTGTATTCTCTATTCTGCAGCCT
3' ss Score
8.25
Exon sequences
Seq C1 exon
TCCTCATAAATCCTCTATTAAAGTTGTTCTTGGTCAGCACTTCTTTAATAGAACGACTGATGTAACGCAAACATTTGAAATAGAGAAATACATCTTATATCCTCAGTATTCAGTGTTCAGCCCTACTGAACATGATATTG
Seq A exon
GTGAGTATTTTTCTTGCAGTTTTATTTCCTGTTTAGTTGACTTAGTTCTAAGTTCAGCTGATGTGTTGAAAACTGCTTTCTTAGGGGAAAAATAATAGACATTAAGAGATGCTTTTGAGAACAGAGTGTTCTTATCTCTACCAGGAAAATAAGAGCATCTGAAAGCTAGACAAATTCAGATAAGAAATAAATTGTGAATTTTAAATAATTATGGTAATTAGCCTTCGGAGCAATTTACCTTGATGTATGGCAGATTCATCATCACTTCAAGTCTTCATGTGATTATGCATTTTTTCAACCATACTAGAAACTGTGGGCTTGATGCAGGAATTACCTGGTAAAATTTTATTGTCTGTACTGTATAGAGCATCTGACTAGATGAATATAATAGCCCTATCTGCTCTGAAAAATCGATGTTACTAAGAATCATTCTTTACACTAAGGAGAGAAATTTAAAAATCAACTGTCTTATTAGTCAAAAGTTAAATGCCCTTCTGATTGACCTTATAATGTTAGTCAGAATGACAATAGAAGAGAAACTTCTTACCTTCTAATCTGCTTTTATGGAAGTTGGCATGTCTCCCTGGGGCATTAATCTGTGTGAGCACTTTGTCTATGAAACTGTTTAATAGTCTGGCATCAGGGATAACTTAGGTCAGGAATGTACTGGCTTTTTTGCTCCCAGATGGTGAATATTTTCCACTGTGTAGCAAAAAGTACTTAGATTTTGTGTTGGTGGGAACTCCGTCAGAGCATACCCAGAGATGAACTTGTTATGGGGCATTGCTCTGCTCTGAAATATCCTGCTGTAAATCACAGTTTACAGTTTGGGATCCCCAAACTTTTTGGATTACTCTGAAATTTGGCATGCATCACATGCAATGTCCAAATTTAGGGTCATCTGGAGACGGAGTTTCTAAGATGTGCCCCACTGCAAAAGAACAAGCAGGCAGAAACTTGGGGGAAAGACCTGTGGGCATGTGACTTCTGCTGATGCAGCAGAAGATTTATTTGGTGCTGAAAATGCATTTTAAAAGTAACCAAGCTACCACATGAATGTTTGATAGAAAGTATGGGGGATTTAGAAACAAGCAGAATTGGTGGGGGAGAAGAGGAAGGTGAGGAAGGCCGTTCTGCTCAATATTGGAGCAATCTGTGTGGACTCATTGGCCTGTGAGATACTGTTACATATTCCACAATAGCCAAAAATTGTAGTCCATAGAGAAATGAGATTATCCAATGGGATTTCTTGCTTTCTACACAGCTGTGTTTAGAAAATCCTCAGCTTATGAAAGCTGTGATATGAAGTTTTAATAGGTATACCCACAATACCTCAGCTCTATTCTCTTTGAGTGGTGTGCTCAAACCCAGCACACTGCTCTTGTTACACCAAACACAACCTCAACCTATGGCTCATCACAGAAGGTTTGCTACAGGAGAAGCAAAGCTTCTGCTACTTTTGGTGTCCGCTTTCACTGTTGAACTCACAATGTTGCACAGACTCATATTTATGCTGTTTTCAGCTTCATGAGGGGAGAGAAAAAGTTGTGTGGGCTGCATAATTCTCAGCAGCTTTCAGAAGCTTGGTTTTGAAATAGCCTAATTTTCTATTCCTTAGTTTTCAAAAATTTGAATTTTGCTGAACTCAGTGATAACAAAGAGGATGAAATACATCAGCTCTTGCAGTAATTAATTTTTTTAAAATCAAAATGGAATTAGGCAGGTGGCCAGACTTTCAGAAGCAGCGAGCGCTTGCACATCCCACTTATTTCAGCTGAAAGTTGTGGATATGTCACTGCTATTTAACTTTAGGGTGGGAGGAGACATGTATTTTCTGTCTTTCCCCTTCTCTACAAAAGCAGTGAAGAAAAATCTGCTCAGTGAGTGAGGCATAAAATAAATATTCCCACAAGAGAGGTAGGTGAATATTTCAGCATTCAATTTAATGTGAAATCAGGTGCTGTTGAGATGAGTCTGTCTGTCTTTGATTGAAATATCTTAATTAAGAGAGGCTTAGGGGATAATTAAAGCTGTATTTGAGACCCACTGCTGCCAATCCTATCAAAAAAAGAGAACAGACACTTTATTCCTACTGTATTCTCTATTCTGCAG
Seq C2 exon
CCTTGATTAAGCTGAAGAAGAATGGCCAACGTTGTGCCGTCAAATCCCAGTTTGTTCAGCCCATCTGCCTGCCAGAAACTAACACAGTTTTCCCCGATGAGTTCAAATGTCAGATTTCTGGATGGGGACACAAACACGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623:ENSGALT00000025185:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]