GgaINT0075170 @ galGal3
Intron Retention
Gene
ENSGALG00000015623 | E1BZN8_CHICK
Description
NA
Coordinates
chr4:84945735-84947725:-
Coord C1 exon
chr4:84947577-84947725
Coord A exon
chr4:84945906-84947576
Coord C2 exon
chr4:84945735-84945905
Length
1671 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TTTCCTTACTTTTAACACAGGGA
3' ss Score
7.3
Exon sequences
Seq C1 exon
ATATAACTGGATACTCAGATGTACTGCAAGAAACATTGATTCCACTTATTCCTGAGGAAAAGTGCAGAAGCCCTGAAATTTATGGAACAGAAATCAGTGAAAATATGTTCTGTGCTGGCTACTTTGACAGCAAATCTGATGCTTGTCAG
Seq A exon
GTAATGTTGTGAGTCATCTCCAGACAAAGAATATAAATGTGTATAATTAGAAGAAATGTTACAGTGCTTACTTTTGACATTACAGTCATCCTAAAGAAAAGAAAGGTTCAAAAATATATATATATATATATGTGTACTTATGTGACTGCACTGTTTGGTTTTTTTTAATGTGTTAATGTCAATTAGATTTTACAAAGGAGCAAAAAAAAAACCCCAAAATCACCACCACCACCAACAACAACCCTTCAGGGTGTTATATTTCTCTTACCTTTATAAAAAGCCAGGGGCTACACAGTAGTGGGAAGCTGCCTGAGCTGCTGGCTGAGTGAGACAGTACTGTGATGGCAAGGGCTTGCTGGCTAGCTGGCAGATAAACCTAATCATCAAGCTGCTGCCTCCCAATAAAAGGAAATAAGAATACCTGTGTAGGAGGTGGGGAACAACATTGGGTTTGGAGGAGAAAAGTTCTGAGGTTATTACAGTGGATGGGTTTTAACTGTAACCGTCCATTAGAAAAAGTTTCATGACTTCCATTCTTCATGGGAGAGCTTCAAATTCTTGCTAGATTTTGTCTCTTTTTGAGTTATGTCACACCCTGGCCCATGAATAAAGGGTATGGAGTTGCTGTGGGGACAGATGACACGTGTGTGAAACTAAGGTTCAGGTTATTTCTTAGATAAACCTTCAGATTTTATCTGCAGTTCATTTGATGGGGTTATGCTCTATTAGAAAAATTTTTGGTAACATGCAGCACATGGCTGATACTTGGCAATGACAGTCTGTAAAGCAAAGAATATCATGTATACTGTGTGCTGGAACTCCTATAGGTATCATTAACATGTCCAAAGAGAAAGAAGAAAGTGGAGGGATGAAGAAAGGGACAGCACAAAGACAAATGTTCTGAAGAGAGTTGCATGGTCTGAGAAACAACAGTGCATTGATACCAAAGTTACAGTCACTGAGATGAAATGTGCAGATGTAAACAAGGTTCTAAGAAAGTAAATTAATCTCAGGTGCAAGACTTCATTTATCACAGAAATCTTATAAGGGCAACAAGTTTCCTTCCAACTTTGATCTGAAAAGAATTTTCTTTTTAAAACAGGAAAAAATCTCTTTCTGCTTAGTCTCGGATAACTGGAAGGGTGGCTTCTTTCCGGGGTACCAAGTAGTTAAATTCAACAGATGCAAAACTGGGTATTCACTACAAAATTATAGCATCACAAAGTCATGGGAGAAAATGTGTATGTGTGCAACACCTTTCTTGGACAATTTTTATAATATCTGATGGCTGCAATAAACTGCAATCCATACAAAGCCTACAGTACGGTGTAGAGTAAATGTCAAAGACTTGCTTATTCCCACTGAAAGAGATGCCAGTCATTCATACTCTTCAGTATATGTCTGAATCCAGAAGAGTTTCAAAAGCACTTCCAAAGAATATCTGATATTTTGGTACTCCTGTTTAATGTGGCATTAAAAATAAAAACCAACAAACCAAACCCATCATATTCAATGTATGATAAATTAAAGTCTCCTACAATTAAACTTCAGTGGACAATTACTTCCATATTTGGTTTTTGTTTTTGTTTTTTAAGTCTGAATCTTACATGTAAACTGTTTTTCCAGTGATTTTCTGTCAAATTAAATAATCTTTCCTTACTTTTAACACAG
Seq C2 exon
GGAGATTCTGGTGGACCTCTGGCCTGTGAGAAAAATGAAATCTCTTACCTTTATGGAGTCATCAGCTGGGGAGATGGCTGTGGCAGAGTCAACAAGCCTGGAGTATATACAAGAGTAACAAACTATGTAAATTGGATTAATGAGAGAATAGCCCCTCGAAAAACTACTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623:ENSGALT00000025185:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.2=78.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACTGGATACTCAGATGTACTGCA
R:
TCAAGTAGTTTTTCGAGGGGCT
Band lengths:
318-1989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]