GgaINT0076251 @ galGal3
Intron Retention
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58304212-58309980:-
Coord C1 exon
chr4:58305357-58309980
Coord A exon
chr4:58305306-58305356
Coord C2 exon
chr4:58304212-58305305
Length
51 bp
Sequences
Splice sites
5' ss Seq
AATGACTGG
5' ss Score
-14.51
3' ss Seq
AAAGCAGAGCTTAAATCCAGAAT
3' ss Score
-6.45
Exon sequences
Seq C1 exon
ATGATGAGACAGAATCTACAGAAACATCTATCCTGAAAAGCCATCTGGTTAATGAAGTCCCTGTACTAGCCAGTCCAGATTTACTGTCTGAAGTTTCTGAGATGAAACAAGATTTGATCAAAATGACTGCCATCTTGACAACTGACCCTTCTGATAAAACAGGCTCTATTAAAGTGAAAGATCTTGGAAAAGCCACTGAAGAGGAGCCAGGAGAGCCTTTTGAAATAGTTGAAAGGGTGAAAGAAGACTTAGAAAAAGTGAATGAAATTCTTAGAGGTGGATCATATACTAAAGAAGAACATGCTTTGCAAAAGTCTCTTTCCAGACAGGAATTTGTAGAAGAAGAATGGGTCATTGTCAGTGATGAAGAAATTGAAGAGGCCAGAAGAAATGCTCCTGTAGAAGTCACTGAACCTATCTGTGTAGAAGTTAGAATAGACAAAGAGACAACAGAGATGGAAAAGAAAGACATGACAGGAATGGTAGATTACCTTACTGAGGATTTAAACAAATACGTTTCTCTTCATGAGGTACAGCCACAAGCTTTACAAGAAGACATAGTAGAAGAGAGATTTGAAGCTGTAGTAATAAGCAGGGATTCTGAAAAAGAAGGACGAGAGTCTCCAACAACCGAAACACTAAGTCCACAAGAACAACATAAGCCAGCCTTAGAAATTAAAAAGCCAGTTAGAACAAAGTTAAGAGACAAGCACAAACAAAAGGAAGGCAAGATGCATAGCAGTGAACAACAACCAGGACTAATGAAGGTCAGTTCAGATGAGTCTCCAAATGAGGAACGTGGCTTAACACCAGCAGCTGCTCCTGAGGCTAAAGCTGTATCCCCTGTCATAGAGGAGACTCCTATTGGCTCAATAAAAGATAAGGTTAAAGCTCTTCAGAAACGAGTGGAAGATGAACAAAAAATACGCTCTAAACTACCTGTCAGAATTCAAACAAGAGAAGGCACTGCTGAAAAGGCTTCTAAAAAACCAGTACCAGTCAAAAAATCAGTTGCACACAAAGCACAGCCTCCTGTTTCACCTTCTCCTAAGACAGAAAGACTTGAAGAGACCATGTCAGTTCGTGAGCTGATGAAAGCCTTCCAGTCAGGTCAAGACCCATCCAAGAATGTATCTGGATTGTTTGAGCACAAGTCTGTCAAACAAAAGCAACAACCCCCTGAGAAGGAAACAACACGGAGAAAAACAATTTCTTCACAAAGTGAAACAAAACGAGTATCAAGCCACAAGACAGACAAACAGAAGGACAAGCAAAGCACAGTATTAAAAGCAGAGAAAGAGCCACAGCCAAAGAAAGGAAGAATGCAAGTGTCCACTGTTGATACTATCAAGAAAACTGTTGGCAAAGACCAAGTAAAACAACAGAGCAGCAAAAAAACAACAGTTGAACCTCCCCCTCCAGTATCTGCTGATGAAAGTACCAAAGATTCAGCAGTTGTAAAGGGCAAGACTTCTGATGACCAAGGTGATACAGACTTTCAGATCAGCCCTGACAGGAAAACCTCAACAGATTTTTCTGATGTCATTAAAGAAGAACTTGAAGACAATGACAAATACCAACAATTTCGACATCTTTCAGTGACAGAGGAAGGTGAGCTTAACTTGGAGCAAGTACTGACCAGTCCCTTCAATGTTGCTTTCCCTGCTGAGTATGTAAAAGATGGATTCCTTCCTGCTCTTTCTCTGCAAAGTGCTGCTTTTGATGGGAGCTCAGAGAGCCTTAAACATGAAGGTGTGGCTGATTCTCCAGGTAGCCTGCTTGATGGAACTCCTCAGATCAGTTCTGAGGAAAGTTATAAACATGAGGGTCTGGCAGAAACTCCAGAAACAAGCCCTGAAAGCCTTTCTTTCTCACCAAAGAAAACTGATGGGCAAATTGAAGAAGCTAAAGGAACAGCTAGAGTACACACAACAGCAGAAACATGTTCTCCGAAGGAACTCTCACCAAAGGAAAATGAAAAAGGTATTACTGAAAAACAGCTAGATGCTGTTACTGAGACTAGTGAGTCTCATTCTGACCGTGTATCAGAAGAGCTTGTACCTACAGCCTCTGAAGAAGAGGCTGATAAACCTAAAGGAAGTAGCTCAGCTTCCATTACGAAAGATATTAGCAGGGATAAAGAATCCAGAACCACTCCACATTTAACTCAGTCTTCTGAAACACATGACACTGCTTTAGAGAAAGAGAAAGATATAACCTGTGAACGCCGTGTTGTGGTTAGAAGTCCCCAAAAATTGGAACTTTCACTTGCTAGCCATGATAGTGAAAGCTTTAGCCCAGTTGCAGATGACTCTGTGGCTGTAAGTCATAAAGACTCACTGGAAGCAAGCCCAGTTCTAGAAGATAACTCCTCACATAAAACGCCTGATTCTTTGGAACCCAGTCCTATGAAAGAATCTCCTTGCCGTGATTCTCTTGAAAGTAGTCCTGTAGAACAAAAAGTGAAAGCTGGTATTTTGGGGCAGGGTCCTCTTCAGCCTATTCTTGGCAAAGGAGAAACTTGCCCAGAGCTGGCAACAGTGCGTTCCAGGATTCTCCGTGACCCTGAGGGAAGTGCTGATGATGACAGTCTAGAGCAAACATCTCTCATGGAGAGTTCAGGGAAAAGTCCTCTTTCACCTGAGACTCCCAGTTCTGAAGAAATTAGCTATGAAATCACACCTAAAACAGCAGACTCACAGGCACTATCAAATATACCAAAGTCAGCCGTGATCCCTGAAGTCAGTGAAGAACCAGAGGATGAATCAGAAAGTGAACCAAAGAAAAGATTTACCCCTGAAGAGGAGATGTTTAAAATGGTGACCAAAATCAAAACATTTGATGAATTAGAGCAAGAAGCAAAGCAGAAGCGTGATTACAAAAAGGATTGTAAGCAAGATGAATGTTCTTTAGTTGCTGACTCAGAAGTCACATGTGAAACTGAGGAACCGAAGTCAAAAACTGTAGAAGAAAAAGATATACCCACAGTGGTAATGTCTTCAGCTGAATCTAGAAAAAGTTCTTCGTCTTCAGAAAGTGAGCCAGAATTGACCCAGCTTAAAAAAGAAGCCGATTCAGGTCTCTTAATGGAACCTGTGATCCGAGTGCAACCACCTTCACCGTTACCATCTAGTATTGACTCTAGTTCTAGCCCTGAAGAAGCAGGTTTTCAACCCATTAATTCAAAACAGTGTTCTTCCAGGATAGGTGCAGTTACAGCAGAAGAGGATAAACCAGCAGAAGACGACAAAGATGAACCATACATCCTTGGAGACAGCTGTAAGGCTTCCACGAGAAAATCAGGCATTTGTCATTCTGATGGTTGTGTATCAGCAGAAACTGAGGAATCAAAATGTGATAGTACAGATGACAGTGAGATGGTTAGTCCTAATGCCCCGGTGACAAAATGTGAGGGTACTCTGTGTCATTCCATTGGTGACTGTTCTCAGAAAGAAGTTCACACTGAGTCTTCAACACTACACCAAGATGATACCAATGCAAATGCTATCAAAAGCACTACTCTTTTAACACATACAGCTCTCACTGCTAAAGGAATGGTGTCTGAGAAAATAGATGATGGTTCTTGTGGACACAGTAACACTGAGTTCTCTGTACTACAAGATGGCAAACTGACTGAAGATGATCCCATTGAACATTCTGATTTTGCAAAAGTAAATGCAGATTTTGAAACACCTCAGACGGAGATTTGTGCTGAGGAACCCTTGTCAGAGTATTCACCCCTTACCACTGAAACAGTGGAACTTGAAAGTTGTGTAGTGGATGCTGCTGAAATTAAAGCTCCTCATATAGTAAGCCCTTATGAAAATGTGTCTTCTGAACATTTTTTTACTGATGGTGGTGAAAGTAAGGTAGGAACTGGTCAAAGTCTGCTCTCTAGGGAAGACTATTCTGTTGAAGAAACAAAGGATCAGACTGGCGAGGCTCTGCTTAGCAGAGGCAAAGGTAGTGAGTATGAATCTTCAGAGGAAGTACATATGGAAACAGAACTTAAAACAGAGGACGTATTTCAGAAAATCTTGCCAGGGTCTTCAGCATCAGATTCCACAAAGTTAGCTGAATCTGCCCTTAAGGATATAAGAGATGAAACAGAGAAAATGATCAGTCAAGTTGTTATTACTAAAACTGATGTAGATTCTGACACATGGAGTGACATACGTGAAGATGATGAAGCTTTTGAAGCTCGAGTAAAAGAAGAGGAACAAAAGATATTTGGGTTGATGGTAGACAGACGATCACAAGGCACAACACCTGATACAACACCAGCCAGAACACCCACTGAAGAAGGGACACCACTTAGTGAACAAAATCCTTTTCTTTTTCAGGAAGGAAAGTTGTTTGAAATGACTAGAAGTGGAGCTATTGACATGACCAAAAGAAACTATCCAGATGAAAGTTTTCATTTCTTCCAAATGGGGCAGCAGCCTCAGGAAGAAGTTTCTTTATGTGAGGAAAAGAAAGAAGCAGTAGAGGCGGAATCTTCCAAGCCAGAGAGCTCACCAGATCCACTGTCACTTTCAGAATCAGAGGACCTGGATATACAAGGAAAAGATACACTGAATCGTTCACCCTCACCACCTGAGCCTTGTGATAAATCAGAAGAAAT
Seq A exon
GACTGGTGAAGGCGTCGGCATAGGCACTGCAAAAGCAGAGCTTAAATCCAG
Seq C2 exon
AATTCCAATTAAAATGGGTATTTCAGCTTCTTCAAAATCACCAAAGAAAGAAACTGCTGCCTCTGAAGCTGAATCCCTCTTCACAGTGGAGACTGACATAGTCGATAGCAGTCAGGTGCCTTTCCCCATCTCTCCTGAGCAGTCTGTGGTAGAAGATGAGTTAGAATTTTCCAAAGTCACTAGATTTGTTTGTTCTGAAAAGGATGATGAGTCCCCAGACTCTTCACCAGAGGAACAGAGATCTGTGATAGAAATCCCTACTGCTTTAATGGAGAGAGTGCCTTCTTGTGAAAGCAAATCCAAAATCCCTGTAAGAACAGCTGCTGCTGCATCACAATCATTGCAACAATCAGAAAATGAGAACCTTTTCACTGATGGCTTCCTAGACAGTCTGCAGTGTGAAGGAAAAGATGACCAAGCAAAACCAAAGTCTAAAATTCCTGTCAAATCAGCTTTCCAGAGAGCTGAACAACAATACACATCCACAGACACATCTGTCCACAAGCTAGAGTCATCCAAAGCTCTCGACATGACAAGCAAACTACCTACAAAACAAGATAGCCGAAGTAAATCTGAATCTGATGCAAGTATTCCCATGGACCCAAAGACCAAACGTTCAATAAAAGCTAGGAGTTATGCAGAGGCAGAAGCAGAGACCTGGGAGAGGGAGAGAGAGTTAAAGGTTGAGCTAGACTCAGATGAGGCAACAGCAGCAAGACCCAAGGTATTTTCATCACGGGTGCCAGTTAAAAGCAGGAGCACTACAGCCTCCCGCACTGCTTTTAGTCCTACAAAAGAAAGTAAGGAACATTTTTTTGACCTGTATAAAAACTCCATAGAATTCTTTGAAGAAATTAGTGATGAAGCTTCTAAGTTAGTGGAAAGACTTACACAATCAGAAAGAGAACAAGAATTAGTTTCAGATGATGAAAGCAGTAGTGCCCTAGAAGTTTCAGTTATTGAAAACGTGCCATCCATTGAGACTCAGCAGTCAGTTCCTGAAGACATCTTTGACACCAGACCTATTTGGGATGAGTCTGTAGAGACTCAGATTGAACGTATACCTGATGACAATATCCATGACCATGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044:ENSGALT00000019661:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=NA C2=0.820
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCGTTCACCCTCACCACC
R:
CCACTGTGAAGAGGGATTCAGC
Band lengths:
137-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]