GgaINT0077106 @ galGal3
Intron Retention
Gene
ENSGALG00000011604 | SLC4A4
Description
NA
Coordinates
chr4:51849294-51851917:+
Coord C1 exon
chr4:51849294-51849482
Coord A exon
chr4:51849483-51851803
Coord C2 exon
chr4:51851804-51851917
Length
2321 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CATGTTGACTCCCATTTCAGGCC
3' ss Score
8.67
Exon sequences
Seq C1 exon
TACAACACCACCATTGACTGGTCGTCTCTGACAAAGAAGGAGTGCTTGAAATACGGGGGACACCTTGTGGGCAACAACTGTGGATATGTCCCTGACATCACCCTCATGTCTTTCATCCTCTTTTTTGGCACTTATACCTGCTCCATGGCCCTGAAGAAATTCAAGACTAGTCGTTATTTTCCAACCACT
Seq A exon
GTAAGTCTCTCCTTTCACGCTAACAGTTGGCTTCTTTACTCTTTCAGAGTGCAGATGAGCCATCCTTTTGGTACAGCTGTCACATGGGGACAGATGCTTTCCAGGGAAACCAGATTGTTTTTGTTGCAATAAAAACATGGTACTGGTTAACCAAGGTATATCATGGAATTGCTTAGCCTTTTCTTTCTCAGTGTTTCTGTATGACACAGGCAAGTCAACAGAAGAGCCAGAAAAACCACAATCTGTCACTGGAATGTAACAGTGATTTCAAAGGTACTGAAGACAACGCTTCCAAGCAAAGCTGCACAATAACGTGATTTATCAGTCTCACACAATAGTAATTTAGACCTATATAGTTTCAAGTGGCCATTTTCAGTGCCAGATACAAAGTTTACTGTACGTATTGACTCTGTTATAGAATGTATGGATGTTTTACAGAAATCATAGATCCAAAAGGGACAATTAATCAATATGTCTAAAAGTTTCCTTGCCTATAGCTAGAAGAGGGGGTGTTTGCTTTGTTACTGAATGAAAGTGGGTAAGCTAGTTGTCTGCATTGAACGGGAGAACAGACATGTCTTTCATGTTACCAGTAGCATTTGAAATAGTCAGAAATTAGTGCAAAAATGTTTAACTCTGCTACAGACCACATCTAGAGTACCTGTTATGGTAGGGACTTGAAACAGGAATTCCATATCTTCTCTTAGGATCAGGTGCAAAATGGGGATGTCCTGATAAGCTTTGAATTGATTTAAACAAGGTTTTGCTCAGACTTCCAGCCAACTTATGTGCATCTCTCGGGTAAATCTGCTTATTCTGTCTCTGCAACTGAACTTGTCATGACAATAGTTAAACATAGAATGGCAGTGGATAAAAAACAAACAGCAGGCCTTTTAGCTGTGAGGAGTTCACTTGAAACGTAGTGGACAAGCAGCTCTGCCCTCTCCACAATATTCTGCCTTTGCCAGTTTCACCAGTTTTCTTCTGAAAGAAGACAGCAGGTTTCCACTCGTGGCCAAAAGACATGTTTATGTAAGACTTGTCCCCCATTTTTGGCATTCTGACACAATGAGATTTATCTTGCAAGGATTTTTACTGTTCTGTTGTATTACAATTGAACCTCTATTATTTTTAATAAAAAAGAAATGAATTCCATCCAGCCTGGAATGCAGCTCAATTTATCTGTAGCCATGTGAACCTGGGAGGCCTAGAAGGAAACATGTACAAAAAGATCACACAGAGTTACAGACAAGCACAGTGGGGCCAGCCTAGTTTAGTTTCAGGGCCCAGCTGGTGGCAGCTTTATATTGCTGTATTCCATTGTTTCCATTAGAGTTGCATTCTTTAAAATATGCAGAGGATTAACCAAGATGCTCCATTTCTCTTGTTGTCTATTTGGGTTAATTTTGGATTAATTTACTACTTGAACAAAAAACAACGTCATTTCAAACTCCGCAGTTCACACAGAACATCACATCTGTCATGGAAATTGGTTTTTCCGTCTACTAAAGGGAAGTCCATGACTATTTCCATTGTCATTTCCATTTAATTTTTTTCTTCCCTTTCTCATTTTTTTTTCCTAAATGTACATTGCAAAATTAGTCCTATTAAAAGAATGGTATCTTATATATGTGTATATATATATATATATCTGTATCTGTATATAAACAGTGTTTTATACTAAGCCTTCATACCTCAGGAATCTTGAGATGATGTGAGAAGTTGAACTTGTATGAAACAGCCTCTGTCTCTGAAAAGAAAAACATGAATATGAGAATCAGAAGGCAAACAGAAGGAGACAATATTAAGCAATGTGTAAAAATGTCACTAATTTTTTATTATTTTTTTTTTAGTTTCATTTCTAAATATTCAATATCTGTTAATGTTGGAAGCTGACCTTGAAGTCTCAGTAATCAGGATGATCACAATGAAAACTTACAAGATTATTTGAAAAAGAAACAAAGCTAAATTATCTCAGAATTCTTCTCAAGATGTTAAATAGTTCTCAACATTACCTTGGCAGTTTGACTTGTCAAAGTAATGAACAGGCAATCTTTCTCTTCAGACTTGTTTTCATGTTTCCATTTAGGCTTAATACTTTGGCTCTCAGGCAAAAAAAAAAAAAAAAATGTAGTAACAAGGCACATTTGGTGGAAATGGCATCAGACATTACAATGTACACCCTAGTTTCTATAGAAGAGGAAATGATTATTTTGTATTGCTACCAAACGCATACTTGGAGTATCACATAGCATCTAAGACATGGATAAAGTAGTGTTTTTTAGTGCTACCTAACCTTACCATGTTGACTCCCATTTCAG
Seq C2 exon
GCCAGGAAGCTCATCAGTGACTTTGCCATTATCTTATCCATTTTGATTTTCTGTGGAATAGATGCCCTGGTAGGTGTGGACACACCAAAACTAATTGTGCCAAGTGAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604:ENSGALT00000018945:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.9=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]